Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_012743.2
Length=62715
Score E
Sequences producing significant alignments: (Bits) Value
seq73604 192 2e-44
seq76879 187 1e-42
seq48801 156 2e-33
seq7145 134 6e-27
seq6427 134 6e-27
>seq73604
Length=2001
Score = 192 bits (212), Expect = 2e-44
Identities = 539/817 (66%), Gaps = 24/817 (3%)
Strand=Plus/Plus
Query 40115 TGGCTGGCGTGGGACAAGCC-GGTCTATGTGGCGCCGGGCCCGGTCGCGGCGGATCGGCT 40173
||||| || ||||| |||| ||| ||| ||||| || |||||||| | ||||| ||
Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034
Query 40174 CTACATTTTCGGCGATGGTGCGCCCAAGATGAAGGTCGGCGCGACGACCTACCCGCTCGC 40233
|||| || |||||||| | || || ||| | ||||| | |||||||| ||||||||
Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094
Query 40234 TGTCCC----CCAGCCCAGCGTCGCGCTGAACGCCGCGACGAGCGGCACCGGCACCGGCG 40289
||| || |||||| | || ||| |||||| || || ||||| |
Sbjct 1095 TGTGCCATTCCCAGCCAAT----GCACTGGTCGCCGCAGTCTCAGGAACAAGCACCTCGG 1150
Query 40290 ACGTGTTCACGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAGTCGGAGC 40349
|| | |||||||| ||| || || || | || || ||||| |||||| ||||| |
Sbjct 1151 ACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAAC 1210
Query 40350 CCTCGCCCATCTCCAATCAGGTGAACTGGCAATCGGGACAGACCGTCACCCTCTCCGGCT 40409
| ||| | | | || | |||| | || ||||| | ||||| || ||||
Sbjct 1211 CAAGCCCCGCCAGCGTGCCCGTAGATTGGCGCCCCGGGCAGACGATGACCCTTTCGGGCT 1270
Query 40410 TTCAGGCGGCGCCCGCCGGCCGCAACATCACGAAGCAGCGCATCTATCGCTCGCAAACGA 40469
| |||| |||| || ||| || |||| | ||||| || || || ||| ||
Sbjct 1271 TCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAATCGG 1330
Query 40470 GTCTTTCGGGCACGGACCTCTATTTCATCGCCGAACGTGACGCATCTGCTGCTAACTTCG 40529
| ||||| | |||||||||||||||| | || | || || ||||| |
Sbjct 1331 GGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAACTTTG 1390
Query 40530 TCGATAATGTGCCATTG--GCCCA-GCAAAACGAG--CCGCTGCCGTCGCTGGAGTGGAA 40584
||||| ||||| | | | | ||| | || ||||||||||| | | | ||
Sbjct 1391 TCGAT-----GCCATCGCTGTCGACGCATTCCAAGAACCGCTGCCGTCCATCAATTACAA 1445
Query 40585 CGCGCCGCCGAACGACCTCACCGGCCTTATCTCGCTCCCCAACGGCATGATGGCCGCGTT 40644
||||| || |||||||| | || || ||| | || || |||||||| |||||||| ||
Sbjct 1446 TGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTT 1505
Query 40645 CCGTGG--GAAAGAGCTCTGGTTTTGCGAGCCGTGGCGCCCGCACGCGTGGCCGGAAAAG 40702
| ||| |||| || ||| || | | |||| || ||||| || |||||||| |||
Sbjct 1506 CGCTGGCCGAAA-AG-TCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAG 1563
Query 40703 TACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTG 40762
| |||| |||| | ||||| | | || | || |||||| |||| || | || ||
Sbjct 1564 TTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTC 1623
Query 40763 GTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACACCATGTCGCAG 40822
|| ||| ||| ||||||| | || |||||| || |||| || | ||| |||
Sbjct 1624 GTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAA 1683
Query 40823 GAAAAGCTAGAGCTCAACCTTCCCTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTAT 40882
| ||| | || | || || || || || ||||| || || |||| ||||||||
Sbjct 1684 GTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATG 1743
Query 40883 GCGATCGCTTACCCGTCGCACGACGGCCTCGTTGTCG 40919
||||| | || || || |||| || || |||| ||
Sbjct 1744 GCGATTGTCTATCCTTCCAACGAGGGACTGGTTGCCG 1780
>seq76879
Length=36809
Score = 187 bits (206), Expect = 1e-42
Identities = 337/481 (70%), Gaps = 20/481 (4%)
Strand=Plus/Plus
Query 26471 CGACAGCAAGAGAATCGCTGCGAGATGGCGGTAGATGAGGACTACTATGACAATATCCAG 26530
||||| || || |||||| || | ||| || || || |||| ||| |||||||| |||
Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292
Query 26531 TGGACGC-AGGAGGA-GCTC-GACGAGCTGAAGGAGCGCGGGCAGTCGCCGACCGTCTAC 26587
||| ||| | ||||| || | |||| ||||||| ||||| ||| |||| ||||||
Sbjct 26293 TGG-CGCGAAGAGGACGCCCAGACGT--TGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349
Query 26588 AACGTCATCTCGCAGAGCGTGAACTGGATCATCGGCAGCGAGAAGCGCGGCCGTTCCGAC 26647
|||||||| || | ||| | ||| | | || | || ||| || ||||
Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409
Query 26648 TTCAAGGTGCTGCCGCGCCGGAAAGAAGGCGGCAAGGCAGCCGAGCGCAAGACCGCGCTC 26707
| |||| | ||||| || || || |||| | ||||| | || |||||||||||| |||||
Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469
Query 26708 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTCGAGGAG 26767
| ||||| ||||| |||||||||| || || ||| | || |||||||||||
Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529
Query 26768 GCAGTGAAGGCCGGCATTGGCTGGCTGGAGAGCCAGATTCAGGACGAGAACGACGGCGAG 26827
|||||||||| ||| ||||||||||| ||| ||| | | | ||||| |||||
Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGAG-----GATGGCGCA-AACCACGACAGCGAG 26583
Query 26828 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATGCTCTGGGACAGCAC-GTA 26880
| |||| ||| || | ||||||||||| ||||| || ||||||||| | | |
Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643
Query 26881 TCGCCGGCTCGACGCGGACGACTGCCGCTACATGTTCCGCTCGAAGTGGGTGGACCTGGA 26940
| | ||||| | ||| | |||| || ||||| || |||||||| ||||| ||
Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702
Query 26941 C 26941
|
Sbjct 26703 C 26703
>seq48801
Length=253520
Score = 156 bits (172), Expect = 2e-33
Identities = 463/696 (67%), Gaps = 16/696 (2%)
Strand=Plus/Plus
Query 40229 CTCGCTGTCCCCCAGCCCAGCGTCGCGCTGAACGCCGCGACGAGCGGCACCGGCACCGGC 40288
||||| || |||| |||| | ||| |||| || || | | |||| | ||||||||
Sbjct 138660 CTCGCGGTGCCCCGGCCCGCCAGCGCTCTGACAGCGGCCGCCACCGGCGCGGGCACCGGA 138719
Query 40289 GACGTGTTCACGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAGTCGGAG 40348
|| | || ||||||||| || | ||| || | |||||||||||| |||
Sbjct 138720 GATACCCAAAGCCGAACCTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCA 138779
Query 40349 CCCTCGCCCATCTCCAA--TCAGGTGAACTGGCAATCGGGACAGACCGTCACCCTCTCCG 40406
|| ||||| || || ||| ||| |||| | | || ||| |||||| || || |
Sbjct 138780 CCGTCGCCTGCTTCGAACATCAT-TGA-CTGGAAGCCCGGGCAGTACGTCACGCTTTCGG 138837
Query 40407 GCTT--TCAGGCGGCGCCCGCCGGCCGCAACATCACGAAGCAGCGCATCTATCGCTCGCA 40464
|||| ||| || || | ||||| || | || |||||||||||||| || ||| ||
Sbjct 138838 GCTTCGTCATGCC-CGTC-GCCGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCA 138895
Query 40465 AACGAGTCTTTCGGGCACGGACCTCTATTTCATCGCCGAACGTGACGCATCTGCTGCTAA 40524
|| || | || || | | ||||||||||||||||| |||| | |||| |||
Sbjct 138896 GACCGGTTCCACCGGGACCTATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAA 138955
Query 40525 CTTCGTCGATAATGT-GCCATTGGCCCAGCAAAACGAGCCGCTGCCGTCGCTGGAGTGGA 40583
||| || || ||| || ||| | || || ||| ||| || ||| | |||
Sbjct 138956 CTTTGTTGACGGTGTCGCGGTTGACGCATTTCAAGAAGC-GCTCCCCTCGGCCGGCTGGG 139014
Query 40584 ACGCGCCGCCGAACGAC-CTCACCGGCCTTATCTCGCTCCCCAACGGCATGATGGCCGCG 40642
||| ||| || | || | ||||||||||| | | | || |||||||||||||| ||
Sbjct 139015 ACGAGCCACC-AGCGGCACTCACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCA 139073
Query 40643 TTCCGTGGGAAAGAGC-TCTGGTTTTGCGAGCCGTGGCGCCCGCACGCGTGGCCGGAAAA 40701
||| || ||| ||| ||| || |||||||| |||||||| |||| |||||||||||
Sbjct 139074 TTC-GTCGGACGCAGCGTCTACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAA 139132
Query 40702 GTACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGT 40761
||| | ||| || | || | || |||||||| | ||| | | | ||
Sbjct 139133 ATACATCTTGAACTGCGACAGCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGT 139192
Query 40762 GGTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACACCATGTCGCA 40821
||| |||| | | | |||||| || | ||||| ||||| | ||| |
Sbjct 139193 CGTCATGACGAAGGCAAATCCCTACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTC 139252
Query 40822 GGAAAAGCTAGAGCTCAACCTTCCC-TGCATCAACGCGCGCGGGCTCGTCGACCTCGGCT 40880
||||||| ||| || | ||||| |||||||||||||| ||| ||| || ||||| |
Sbjct 139253 TCAAAAGCTCGAG-TCGAATTTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGT 139311
Query 40881 ATGCGATCGCTTACCCGTCGCACGACGGCCTCGTTG 40916
||| ||| || ||| |||| || || ||||
Sbjct 139312 TTGCAATCTGCTATCCGAGCAACGATGGTCTTGTTG 139347
>seq7145
Length=2121
Score = 134 bits (148), Expect = 6e-27
Identities = 265/383 (69%), Gaps = 17/383 (4%)
Strand=Plus/Plus
Query 57448 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACCGAGGCAT 57507
|||||||||| ||||| ||||||||| |||| ||||| ||||||||||| |||||
Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509
Query 57508 GGA--ACG-GGCTGAATGGCCGCCTCGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCG 57564
||| ||| ||||| ||||| | |||||| ||| ||| | || ||| | |
Sbjct 510 GGAATACGCTCCTGAA---GCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 566
Query 57565 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGCGCAAGTGTTGCGAGCGCGCA---ACGCG 57621
| | || ||| ||||||||||||||| |||| | |||||| | || | ||
Sbjct 567 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 626
Query 57622 CTGGAGCCATGCCCGAGACGCTGACCGCCGAGGAGTTCGGCGCCTACACGATCGAGCACT 57681
| || |||| | || ||||||||||| || |||||||| || |||| || | |
Sbjct 627 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 686
Query 57682 ACGA-GCAGGCTCCGGCCGCGTTCCGTAAG---TGGGCCGACGACGTGATCGGCGCGGTG 57737
|||| ||| || |||| |||| || ||| |||| || ||| | ||||| ||
Sbjct 687 ACGACGCA-GCGCCGGGCGCG--GCG-AAGCGCTGGGTTGATGACCTCGTCGGCCATGTA 742
Query 57738 AAGGCGTGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGAcgccggcgcagctc 57797
||||||||| |||| || | |||||| ||| | || |||||||| || ||| |
Sbjct 743 AAGGCGTGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTG 802
Query 57798 cgcgcgctcgccgccgccgcgcT 57820
||| |||||||| |||||||
Sbjct 803 CGCTCGCTCGCCTTGTCCGCGCT 825
>seq6427
Length=47605
Score = 134 bits (148), Expect = 6e-27
Identities = 265/383 (69%), Gaps = 17/383 (4%)
Strand=Plus/Plus
Query 57448 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACCGAGGCAT 57507
|||||||||| ||||| ||||||||| |||| ||||| ||||||||||| |||||
Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995
Query 57508 GGA--ACG-GGCTGAATGGCCGCCTCGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCG 57564
||| ||| ||||| ||||| | |||||| ||| ||| | || ||| | |
Sbjct 9996 GGAATACGCTCCTGAA---GCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 10052
Query 57565 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGCGCAAGTGTTGCGAGCGCGCA---ACGCG 57621
| | || ||| ||||||||||||||| |||| | |||||| | || | ||
Sbjct 10053 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 10112
Query 57622 CTGGAGCCATGCCCGAGACGCTGACCGCCGAGGAGTTCGGCGCCTACACGATCGAGCACT 57681
| || |||| | || ||||||||||| || |||||||| || |||| || | |
Sbjct 10113 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 10172
Query 57682 ACGA-GCAGGCTCCGGCCGCGTTCCGTAAG---TGGGCCGACGACGTGATCGGCGCGGTG 57737
|||| ||| || |||| |||| || ||| |||| || ||| | ||||| ||
Sbjct 10173 ACGACGCA-GCGCCGGGCGCG--GCG-AAGCGCTGGGTTGATGACCTCGTCGGCCATGTA 10228
Query 57738 AAGGCGTGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGAcgccggcgcagctc 57797
||||||||| |||| || | |||||| ||| | || |||||||| || ||| |
Sbjct 10229 AAGGCGTGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTG 10288
Query 57798 cgcgcgctcgccgccgccgcgcT 57820
||| |||||||| |||||||
Sbjct 10289 CGCTCGCTCGCCTTGTCCGCGCT 10311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200374201775520
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