Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq73604 192 2e-44 seq76879 187 1e-42 seq48801 156 2e-33 seq7145 134 6e-27 seq6427 134 6e-27 >seq73604 Length=2001 Score = 192 bits (212), Expect = 2e-44 Identities = 539/817 (66%), Gaps = 24/817 (3%) Strand=Plus/Plus Query 40115 TGGCTGGCGTGGGACAAGCC-GGTCTATGTGGCGCCGGGCCCGGTCGCGGCGGATCGGCT 40173 ||||| || ||||| |||| ||| ||| ||||| || |||||||| | ||||| || Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034 Query 40174 CTACATTTTCGGCGATGGTGCGCCCAAGATGAAGGTCGGCGCGACGACCTACCCGCTCGC 40233 |||| || |||||||| | || || ||| | ||||| | |||||||| |||||||| Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094 Query 40234 TGTCCC----CCAGCCCAGCGTCGCGCTGAACGCCGCGACGAGCGGCACCGGCACCGGCG 40289 ||| || |||||| | || ||| |||||| || || ||||| | Sbjct 1095 TGTGCCATTCCCAGCCAAT----GCACTGGTCGCCGCAGTCTCAGGAACAAGCACCTCGG 1150 Query 40290 ACGTGTTCACGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAGTCGGAGC 40349 || | |||||||| ||| || || || | || || ||||| |||||| ||||| | Sbjct 1151 ACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAAC 1210 Query 40350 CCTCGCCCATCTCCAATCAGGTGAACTGGCAATCGGGACAGACCGTCACCCTCTCCGGCT 40409 | ||| | | | || | |||| | || ||||| | ||||| || |||| Sbjct 1211 CAAGCCCCGCCAGCGTGCCCGTAGATTGGCGCCCCGGGCAGACGATGACCCTTTCGGGCT 1270 Query 40410 TTCAGGCGGCGCCCGCCGGCCGCAACATCACGAAGCAGCGCATCTATCGCTCGCAAACGA 40469 | |||| |||| || ||| || |||| | ||||| || || || ||| || Sbjct 1271 TCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAATCGG 1330 Query 40470 GTCTTTCGGGCACGGACCTCTATTTCATCGCCGAACGTGACGCATCTGCTGCTAACTTCG 40529 | ||||| | |||||||||||||||| | || | || || ||||| | Sbjct 1331 GGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAACTTTG 1390 Query 40530 TCGATAATGTGCCATTG--GCCCA-GCAAAACGAG--CCGCTGCCGTCGCTGGAGTGGAA 40584 ||||| ||||| | | | | ||| | || ||||||||||| | | | || Sbjct 1391 TCGAT-----GCCATCGCTGTCGACGCATTCCAAGAACCGCTGCCGTCCATCAATTACAA 1445 Query 40585 CGCGCCGCCGAACGACCTCACCGGCCTTATCTCGCTCCCCAACGGCATGATGGCCGCGTT 40644 ||||| || |||||||| | || || ||| | || || |||||||| |||||||| || Sbjct 1446 TGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTT 1505 Query 40645 CCGTGG--GAAAGAGCTCTGGTTTTGCGAGCCGTGGCGCCCGCACGCGTGGCCGGAAAAG 40702 | ||| |||| || ||| || | | |||| || ||||| || |||||||| ||| Sbjct 1506 CGCTGGCCGAAA-AG-TCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAG 1563 Query 40703 TACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTG 40762 | |||| |||| | ||||| | | || | || |||||| |||| || | || || Sbjct 1564 TTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTC 1623 Query 40763 GTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACACCATGTCGCAG 40822 || ||| ||| ||||||| | || |||||| || |||| || | ||| ||| Sbjct 1624 GTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAA 1683 Query 40823 GAAAAGCTAGAGCTCAACCTTCCCTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTAT 40882 | ||| | || | || || || || || ||||| || || |||| |||||||| Sbjct 1684 GTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATG 1743 Query 40883 GCGATCGCTTACCCGTCGCACGACGGCCTCGTTGTCG 40919 ||||| | || || || |||| || || |||| || Sbjct 1744 GCGATTGTCTATCCTTCCAACGAGGGACTGGTTGCCG 1780 >seq76879 Length=36809 Score = 187 bits (206), Expect = 1e-42 Identities = 337/481 (70%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 26471 CGACAGCAAGAGAATCGCTGCGAGATGGCGGTAGATGAGGACTACTATGACAATATCCAG 26530 ||||| || || |||||| || | ||| || || || |||| ||| |||||||| ||| Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292 Query 26531 TGGACGC-AGGAGGA-GCTC-GACGAGCTGAAGGAGCGCGGGCAGTCGCCGACCGTCTAC 26587 ||| ||| | ||||| || | |||| ||||||| ||||| ||| |||| |||||| Sbjct 26293 TGG-CGCGAAGAGGACGCCCAGACGT--TGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349 Query 26588 AACGTCATCTCGCAGAGCGTGAACTGGATCATCGGCAGCGAGAAGCGCGGCCGTTCCGAC 26647 |||||||| || | ||| | ||| | | || | || ||| || |||| Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409 Query 26648 TTCAAGGTGCTGCCGCGCCGGAAAGAAGGCGGCAAGGCAGCCGAGCGCAAGACCGCGCTC 26707 | |||| | ||||| || || || |||| | ||||| | || |||||||||||| ||||| Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469 Query 26708 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTCGAGGAG 26767 | ||||| ||||| |||||||||| || || ||| | || ||||||||||| Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529 Query 26768 GCAGTGAAGGCCGGCATTGGCTGGCTGGAGAGCCAGATTCAGGACGAGAACGACGGCGAG 26827 |||||||||| ||| ||||||||||| ||| ||| | | | ||||| ||||| Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGAG-----GATGGCGCA-AACCACGACAGCGAG 26583 Query 26828 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATGCTCTGGGACAGCAC-GTA 26880 | |||| ||| || | ||||||||||| ||||| || ||||||||| | | | Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643 Query 26881 TCGCCGGCTCGACGCGGACGACTGCCGCTACATGTTCCGCTCGAAGTGGGTGGACCTGGA 26940 | | ||||| | ||| | |||| || ||||| || |||||||| ||||| || Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702 Query 26941 C 26941 | Sbjct 26703 C 26703 >seq48801 Length=253520 Score = 156 bits (172), Expect = 2e-33 Identities = 463/696 (67%), Gaps = 16/696 (2%) Strand=Plus/Plus Query 40229 CTCGCTGTCCCCCAGCCCAGCGTCGCGCTGAACGCCGCGACGAGCGGCACCGGCACCGGC 40288 ||||| || |||| |||| | ||| |||| || || | | |||| | |||||||| Sbjct 138660 CTCGCGGTGCCCCGGCCCGCCAGCGCTCTGACAGCGGCCGCCACCGGCGCGGGCACCGGA 138719 Query 40289 GACGTGTTCACGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAGTCGGAG 40348 || | || ||||||||| || | ||| || | |||||||||||| ||| Sbjct 138720 GATACCCAAAGCCGAACCTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCA 138779 Query 40349 CCCTCGCCCATCTCCAA--TCAGGTGAACTGGCAATCGGGACAGACCGTCACCCTCTCCG 40406 || ||||| || || ||| ||| |||| | | || ||| |||||| || || | Sbjct 138780 CCGTCGCCTGCTTCGAACATCAT-TGA-CTGGAAGCCCGGGCAGTACGTCACGCTTTCGG 138837 Query 40407 GCTT--TCAGGCGGCGCCCGCCGGCCGCAACATCACGAAGCAGCGCATCTATCGCTCGCA 40464 |||| ||| || || | ||||| || | || |||||||||||||| || ||| || Sbjct 138838 GCTTCGTCATGCC-CGTC-GCCGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCA 138895 Query 40465 AACGAGTCTTTCGGGCACGGACCTCTATTTCATCGCCGAACGTGACGCATCTGCTGCTAA 40524 || || | || || | | ||||||||||||||||| |||| | |||| ||| Sbjct 138896 GACCGGTTCCACCGGGACCTATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAA 138955 Query 40525 CTTCGTCGATAATGT-GCCATTGGCCCAGCAAAACGAGCCGCTGCCGTCGCTGGAGTGGA 40583 ||| || || ||| || ||| | || || ||| ||| || ||| | ||| Sbjct 138956 CTTTGTTGACGGTGTCGCGGTTGACGCATTTCAAGAAGC-GCTCCCCTCGGCCGGCTGGG 139014 Query 40584 ACGCGCCGCCGAACGAC-CTCACCGGCCTTATCTCGCTCCCCAACGGCATGATGGCCGCG 40642 ||| ||| || | || | ||||||||||| | | | || |||||||||||||| || Sbjct 139015 ACGAGCCACC-AGCGGCACTCACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCA 139073 Query 40643 TTCCGTGGGAAAGAGC-TCTGGTTTTGCGAGCCGTGGCGCCCGCACGCGTGGCCGGAAAA 40701 ||| || ||| ||| ||| || |||||||| |||||||| |||| ||||||||||| Sbjct 139074 TTC-GTCGGACGCAGCGTCTACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAA 139132 Query 40702 GTACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGT 40761 ||| | ||| || | || | || |||||||| | ||| | | | || Sbjct 139133 ATACATCTTGAACTGCGACAGCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGT 139192 Query 40762 GGTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACACCATGTCGCA 40821 ||| |||| | | | |||||| || | ||||| ||||| | ||| | Sbjct 139193 CGTCATGACGAAGGCAAATCCCTACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTC 139252 Query 40822 GGAAAAGCTAGAGCTCAACCTTCCC-TGCATCAACGCGCGCGGGCTCGTCGACCTCGGCT 40880 ||||||| ||| || | ||||| |||||||||||||| ||| ||| || ||||| | Sbjct 139253 TCAAAAGCTCGAG-TCGAATTTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGT 139311 Query 40881 ATGCGATCGCTTACCCGTCGCACGACGGCCTCGTTG 40916 ||| ||| || ||| |||| || || |||| Sbjct 139312 TTGCAATCTGCTATCCGAGCAACGATGGTCTTGTTG 139347 >seq7145 Length=2121 Score = 134 bits (148), Expect = 6e-27 Identities = 265/383 (69%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 57448 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACCGAGGCAT 57507 |||||||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||| Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509 Query 57508 GGA--ACG-GGCTGAATGGCCGCCTCGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCG 57564 ||| ||| ||||| ||||| | |||||| ||| ||| | || ||| | | Sbjct 510 GGAATACGCTCCTGAA---GCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 566 Query 57565 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGCGCAAGTGTTGCGAGCGCGCA---ACGCG 57621 | | || ||| ||||||||||||||| |||| | |||||| | || | || Sbjct 567 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 626 Query 57622 CTGGAGCCATGCCCGAGACGCTGACCGCCGAGGAGTTCGGCGCCTACACGATCGAGCACT 57681 | || |||| | || ||||||||||| || |||||||| || |||| || | | Sbjct 627 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 686 Query 57682 ACGA-GCAGGCTCCGGCCGCGTTCCGTAAG---TGGGCCGACGACGTGATCGGCGCGGTG 57737 |||| ||| || |||| |||| || ||| |||| || ||| | ||||| || Sbjct 687 ACGACGCA-GCGCCGGGCGCG--GCG-AAGCGCTGGGTTGATGACCTCGTCGGCCATGTA 742 Query 57738 AAGGCGTGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGAcgccggcgcagctc 57797 ||||||||| |||| || | |||||| ||| | || |||||||| || ||| | Sbjct 743 AAGGCGTGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTG 802 Query 57798 cgcgcgctcgccgccgccgcgcT 57820 ||| |||||||| ||||||| Sbjct 803 CGCTCGCTCGCCTTGTCCGCGCT 825 >seq6427 Length=47605 Score = 134 bits (148), Expect = 6e-27 Identities = 265/383 (69%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 57448 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACCGAGGCAT 57507 |||||||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||| Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995 Query 57508 GGA--ACG-GGCTGAATGGCCGCCTCGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCG 57564 ||| ||| ||||| ||||| | |||||| ||| ||| | || ||| | | Sbjct 9996 GGAATACGCTCCTGAA---GCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 10052 Query 57565 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGCGCAAGTGTTGCGAGCGCGCA---ACGCG 57621 | | || ||| ||||||||||||||| |||| | |||||| | || | || Sbjct 10053 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 10112 Query 57622 CTGGAGCCATGCCCGAGACGCTGACCGCCGAGGAGTTCGGCGCCTACACGATCGAGCACT 57681 | || |||| | || ||||||||||| || |||||||| || |||| || | | Sbjct 10113 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 10172 Query 57682 ACGA-GCAGGCTCCGGCCGCGTTCCGTAAG---TGGGCCGACGACGTGATCGGCGCGGTG 57737 |||| ||| || |||| |||| || ||| |||| || ||| | ||||| || Sbjct 10173 ACGACGCA-GCGCCGGGCGCG--GCG-AAGCGCTGGGTTGATGACCTCGTCGGCCATGTA 10228 Query 57738 AAGGCGTGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGAcgccggcgcagctc 57797 ||||||||| |||| || | |||||| ||| | || |||||||| || ||| | Sbjct 10229 AAGGCGTGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTG 10288 Query 57798 cgcgcgctcgccgccgccgcgcT 57820 ||| |||||||| ||||||| Sbjct 10289 CGCTCGCTCGCCTTGTCCGCGCT 10311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200374201775520