Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq39996 107 2e-18
>seq39996
Length=45000
Score = 107 bits (118), Expect = 2e-18
Identities = 256/381 (67%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748
|||| || || ||| || || ||||| || || || || ||| |||||| | |||
Sbjct 6565 CACGACGACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGG 6624
Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCGAAGCCATCCATCTCA 12806
||||| || || ||||||| | |||||| || ||| |||||||| ||||| ||
Sbjct 6625 ACGGTTGGTGGCGGCGATGAGGATGATGCCT-TCATTCGCC-TCGAAGCCGTCCATTTCG 6682
Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG 12866
|| || || || | || ||||| || || || || || | ||| || |
Sbjct 6683 ACCAGCAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACCGCCACCAAGACCGGCGCCA 6742
Query 12867 CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGG 12926
|| || ||||||||||| |||||||| ||||| | ||| || ||| ||| | |
Sbjct 6743 CGATGGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTG 6802
Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986
|| || || || || ||||| | | || ||||| || || ||||| ||||| ||
Sbjct 6803 GCTTGCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAG 6862
Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045
| | ||||| || | || ||| || || |||| |||||| |||| || || || ||
Sbjct 6863 TCCGAACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAG 6921
Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066
|| ||||| ||||| || ||
Sbjct 6922 AAGCGTCTTACCCGTACCGGG 6942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612914245291200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |