Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq39996 107 2e-18 >seq39996 Length=45000 Score = 107 bits (118), Expect = 2e-18 Identities = 256/381 (67%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748 |||| || || ||| || || ||||| || || || || ||| |||||| | ||| Sbjct 6565 CACGACGACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGG 6624 Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCGAAGCCATCCATCTCA 12806 ||||| || || ||||||| | |||||| || ||| |||||||| ||||| || Sbjct 6625 ACGGTTGGTGGCGGCGATGAGGATGATGCCT-TCATTCGCC-TCGAAGCCGTCCATTTCG 6682 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG 12866 || || || || | || ||||| || || || || || | ||| || | Sbjct 6683 ACCAGCAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACCGCCACCAAGACCGGCGCCA 6742 Query 12867 CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGG 12926 || || ||||||||||| |||||||| ||||| | ||| || ||| ||| | | Sbjct 6743 CGATGGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTG 6802 Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 || || || || || ||||| | | || ||||| || || ||||| ||||| || Sbjct 6803 GCTTGCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAG 6862 Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | ||||| || | || ||| || || |||| |||||| |||| || || || || Sbjct 6863 TCCGAACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAG 6921 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || ||||| ||||| || || Sbjct 6922 AAGCGTCTTACCCGTACCGGG 6942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612914245291200