Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 143 6e-29
seq70604 136 9e-27
seq34609 132 1e-25
seq75383 131 4e-25
seq42836 122 2e-22
seq25926 120 7e-22
seq69229 118 2e-21
seq64865 113 1e-19
seq61258 91.5 3e-13
seq52137 89.7 1e-12
>seq33366
Length=1752596
Score = 143 bits (158), Expect = 6e-29
Identities = 163/218 (75%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || |||||||| || || | |||||| |||| | ||| | ||||||
Sbjct 780159 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 780100
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| |||||||| | ||||||||| || ||| ||||| |||
Sbjct 780099 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 780040
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| |||||| | | || || |||| ||||| |||
Sbjct 780039 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 779980
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || || |||||||| || ||||| ||||||
Sbjct 779979 TTGCCGGTCAGGGTTTTCACGAAGATTTG---CATTTT 779945
>seq70604
Length=2882449
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| || || || ||||| ||||||||||| | ||||||||||| ||||||
Sbjct 1789359 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 1789418
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| ||| | || || ||||| || | |||||||| ||| |||||||
Sbjct 1789419 CGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 1789478
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | || || | | | || || |
Sbjct 1789479 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGA 1789538
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| ||||| || || ||||| ||||| ||
Sbjct 1789539 GTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTG 1789576
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| ||| ||||| || || | ||| ||||||||||| | |||||| | || ||||||
Sbjct 1789458 AAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 1789399
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
| || || ||||| |||||||| || || |||||||||||
Sbjct 1789398 TTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCG 1789359
>seq34609
Length=2775773
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| | || || ||||| ||||||||||| | ||||||||||| ||||||
Sbjct 2545721 CGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 2545780
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| ||||| || | ||||| || | |||||||| ||| |||||||
Sbjct 2545781 CGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 2545840
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | || |||| | || || || |
Sbjct 2545841 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGA 2545900
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || |||| ||||| ||
Sbjct 2545901 GTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTG 2545938
>seq75383
Length=1910755
Score = 131 bits (144), Expect = 4e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||
Sbjct 170130 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 170071
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || ||||| ||||| || | ||||||||| || || || ||| ||
Sbjct 170070 TTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 170011
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||
Sbjct 170010 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 169951
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| | || ||||| || || ||
Sbjct 169950 CTTGCCCGTCAAGGTCTTCACGAAGATCTG 169921
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 169217 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169158
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| || | ||||||||| || || || ||| ||
Sbjct 169157 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169098
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || |||| ||||| |||
Sbjct 169097 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169038
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || ||||| || || ||
Sbjct 169037 TTGCCCGTCAAGGTCTTCACGAAGATCTG 169009
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 169445 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169386
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| || | ||||||||| || || || ||| ||
Sbjct 169385 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169326
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || |||| ||||| |||
Sbjct 169325 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169266
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || ||||| || || ||
Sbjct 169265 TTGCCCGTCAAGGTCTTCACGAAGATCTG 169237
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 169673 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169614
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| || | ||||||||| || || || ||| ||
Sbjct 169613 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169554
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || |||| ||||| |||
Sbjct 169553 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169494
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || ||||| || || ||
Sbjct 169493 TTGCCCGTCAAGGTCTTCACGAAGATCTG 169465
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 169901 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169842
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| || | ||||||||| || || || ||| ||
Sbjct 169841 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169782
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || |||| ||||| |||
Sbjct 169781 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169722
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || ||||| || || ||
Sbjct 169721 TTGCCCGTCAAGGTCTTCACGAAGATCTG 169693
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| ||||| || |||| ||||||||||| || || | ||||||
Sbjct 168989 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 168930
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| ||||| | | ||||||||| || || |||||| ||
Sbjct 168929 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCT 168870
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || |||| ||||| ||
Sbjct 168869 TGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGTT 168810
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| || ||
Sbjct 168809 TTACCAGTGAGGGTCTTTACAAAGATCTG 168781
>seq42836
Length=1893264
Score = 122 bits (134), Expect = 2e-22
Identities = 158/217 (73%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| || | || ||||| ||||||||||| | ||||||||||| |||||| |
Sbjct 1011603 AAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 1011544
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||||||||| ||||| || || ||||| || | |||||||| ||| |||||||||
Sbjct 1011543 TCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 1011484
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| | | || ||| | || || | | || || | | ||
Sbjct 1011483 CTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGT 1011424
Query 199591 GATCGTCTTACCCGT-GAGAGTTTTCACAAAAATTTG 199626
||| ||||| || || ||||| ||||||||||| ||
Sbjct 1011423 GATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTG 1011387
>seq25926
Length=4460019
Score = 120 bits (132), Expect = 7e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| || || ||||| ||||||||||| | |||| |||||| |||||| |
Sbjct 2859478 AAGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACG 2859537
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||| ||||| || || ||||| || | |||||||| ||| |||||||||
Sbjct 2859538 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 2859597
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| ||| || ||| || || | | || || || | ||
Sbjct 2859598 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGT 2859657
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| | ||| || || ||||| ||||| ||
Sbjct 2859658 GATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTG 2859693
>seq69229
Length=1436921
Score = 118 bits (130), Expect = 2e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| ||||| | ||||| | ||||||||| | ||||||||||| |||||| |
Sbjct 420449 AAGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 420508
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||| ||||| || || ||||| || | || ||||| |||| |||||||||
Sbjct 420509 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTC 420568
Query 199531 TCGCTCCTGAATCTT 199545
||||| |||||
Sbjct 420569 CTTATCCTGGATCTT 420583
>seq64865
Length=1526523
Score = 113 bits (124), Expect = 1e-19
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| | ||| || ||||| ||||||||||| | ||||||||||| |||||| |
Sbjct 730077 GAAGTCTCAACAAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 730136
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
|||||||| ||| ||||| || || ||||| || | |||||||| ||| | |||||
Sbjct 730137 ATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTT 730196
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| |||| | ||| ||| || ||| | || |||| | || || || |
Sbjct 730197 CCTTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAG 730256
Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| || ||||| ||| | || || ||||| ||||| ||
Sbjct 730257 TCATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTG 730293
>seq61258
Length=1460494
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/122 (77%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||| ||||||| ||||| || ||||| ||||||||||| | |||||||| | |||||
Sbjct 487687 CGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAG-A 487629
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| || || || || | ||| || | |||||||| ||| || |||
Sbjct 487628 CATCCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCT 487569
Query 199529 TC 199530
||
Sbjct 487568 TC 487567
>seq52137
Length=2295796
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || ||||
Sbjct 413529 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 413588
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || | |||||||| ||| |||||||
Sbjct 413589 TCAGTCTTTGCTGGTCAGGAGGAATTCCT 413617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177753686580440
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