Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq33366 131 2e-25 seq75383 127 2e-24 seq37082 107 2e-18 >seq33366 Length=1752596 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || || || ||||| || || Sbjct 780175 GCCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 780116 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||||||||||| || || | | ||||||||| | || Sbjct 780115 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 780056 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | || | | ||||| || | ||||| Sbjct 780055 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 779996 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| ||||| || ||||||||||||||| Sbjct 779995 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 779944 >seq75383 Length=1910755 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| |||||||| || Sbjct 169004 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 168945 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||| || ||||| || ||||| | ||||||||| | || Sbjct 168944 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 168885 Query 46487 ACGCTCTCCTTGTCCATG-ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || ||| | | || |||||| ||||| || | | ||||| |||| ||||| Sbjct 168884 ATGC-CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCAC 168826 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || || || || || |||||||| |||||| Sbjct 168825 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777 >seq37082 Length=86608 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | | | | | ||||||||| || ||| || |||||||||||||| | Sbjct 35191 TGCCGCCTCGCAGAGGAAGCGCCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTG 35250 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||| | | || || |||| ||||||| ||| |||| ||||||||||| | | Sbjct 35251 ACAGAGTGTGGCCATCCTCCAGCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTG 35310 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| ||| || ||| || | | ||||| || | || | Sbjct 35311 GGATGCCCTCCTCGTCTTGGATTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGA 35370 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||| |||||| |||| || || |||||||| ||||| Sbjct 35371 CCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 35419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564692097086400