Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq39996 95.1 2e-14 >seq39996 Length=45000 Score = 95.1 bits (104), Expect = 2e-14 Identities = 253/376 (67%), Gaps = 8/376 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || || ||| || || ||||| || || || || ||| ||||| | ||| || || Sbjct 6571 GACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGGACGGTT 6630 Query 15938 CGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 || |||||||||| | || ||| |||| || || || ||||| || || | Sbjct 6631 GGTGGCGGCGATGAGGATGATGCCTTCATTCGCC-TCGAAGCCGTCCATTTCGACCAGCA 6689 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT-ACCACCAGCACTGCGTTGC 16055 ||||||| | || ||||| || || || || | | || | ||| || | || || Sbjct 6690 GCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACC-GCCACCAAGACCGGCGCCACGATGG 6748 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGAC 16114 || ||||| || || || || ||||||| |||||| ||| ||| ||| | || Sbjct 6749 CGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTG-GCTTG 6807 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 || || | || || || || | ||||| || || || ||||| ||||| |||| | Sbjct 6808 CTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAGTCCGA 6867 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 ||||| || | || ||| || ||||| | |||||| || | || || || ||||| | Sbjct 6868 ACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAGAAGCG 6926 Query 16234 TCTTACCCGTACCTGG 16249 ||||||||||||| || Sbjct 6927 TCTTACCCGTACCGGG 6942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620142452470400