Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq39996 132 6e-26
seq63175 93.3 5e-14
seq57787 93.3 5e-14
seq42862 93.3 5e-14
seq3292 93.3 5e-14
seq65209 89.7 6e-13
seq26065 82.4 9e-11
>seq39996
Length=45000
Score = 132 bits (146), Expect = 6e-26
Identities = 279/409 (68%), Gaps = 14/409 (3%)
Strand=Plus/Plus
Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558
|| ||| ||||||||||| || || || || || ||||||| || |||||| ||
Sbjct 6574 CTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGGACGGTTGGT 6633
Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615
||||| |||| | ||||| ||||| ||||| ||||||||||| || ||
Sbjct 6634 GGCGGCGATGAGGATGATGCCT---TCATTCGCCTCGAAGCCGTCCATTTCGACCAGCAG 6690
Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTT 11672
|||||| | ||||||||| ||||| ||||| | || |||| || || ||| |
Sbjct 6691 CTGGTTCAGCGTCTGTTCGCGCTCGTCGTT--ACCGCC-ACCAAGACCGGCGCCACGATG 6747
Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732
||||| ||||| || || |||||||| | ||| || ||| || || ||
Sbjct 6748 GCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTGGCTTG 6807
Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792
||||| | ||||| || || | || || || || |||||||| || ||||||| |
Sbjct 6808 CTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAGTCCGA 6867
Query 11793 GGCAGAACAC-TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| ||| |||| ||| || ||||| | ||||| |||| || || || || || |
Sbjct 6868 ACCGGAAATGGTGAA-GAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAGAAGCG 6926
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTT 11900
||||||||||||| || | || | ||||| |||| || ||||| ||
Sbjct 6927 TCTTACCCGTACCGGGAGGGCCGACCAGAAGCACGCCGCGCGGGATTTT 6975
>seq63175
Length=1720526
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 18691 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 18749
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 221499 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 221441
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||
Sbjct 383395 TAGCTCAGTTGGTTAGAGTGTGGTGCTAATAACGCCAAGGTTGCGGGTTCGATCCCCGT 383453
>seq57787
Length=1106571
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 451311 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 451369
>seq42862
Length=585711
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 385136 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 385078
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 386846 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 386788
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 399275 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 399217
>seq3292
Length=7324000
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 3732240 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 3732298
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 3751600 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 3751542
>seq65209
Length=3338390
Score = 89.7 bits (98), Expect = 6e-13
Identities = 176/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 158473 GGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTT 158532
|| || ||||| | ||||| |||||||| || ||||| | || |||| || | ||
Sbjct 2239751 GGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTA 2239692
Query 158533 GGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCAT 158592
|| || || ||||| ||| ||||||| ||| | || || || || || ||| |
Sbjct 2239691 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTT 2239632
Query 158593 GGAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAAC-G 158651
|| | || | ||||| || || ||||||||||| | ||| |||| || |||| |
Sbjct 2239631 GGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAACTGCATAGCTCATTTGTGAACGG 2239572
Query 158652 TTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGGGGTTCGGG 158711
| | || ||| || |||||| || | || | || || || || |||||||| ||
Sbjct 2239571 ATATTTTAC-CCAGAAATAGAGGAAGTTCAAATTTTAGATGACACTGAAAGGGGTTCCGG 2239513
Query 158712 TGGATTTGGTTCTACTGG 158729
|| |||||||| |||||
Sbjct 2239512 AGGCTTTGGTTCCACTGG 2239495
>seq26065
Length=1373002
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574
||||||| | |||||||||||| || |||||||||||||||||||||||||
Sbjct 1017728 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1017669
Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624
||||||| || || ||| |||| ||| || ||||| || || || |||
Sbjct 1017668 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACA 1017619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588406754696000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |