Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq43885 89.7 6e-13
seq29163 89.7 6e-13
seq39996 86.0 7e-12
>seq43885
Length=2353850
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431
|||||||||||||||| || | ||||| || ||||| ||||| ||| |||| |
Sbjct 205164 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 205105
Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491
|| |||||| | ||| ||| ||||||||||||||| || | | | |||
Sbjct 205104 TCACGAACCAGAGCTGGGCCAACAGCAACAAACATCTCCAGGAACTCAG-ACCTATTCAT 205046
Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550
| ||||||||| ||| || || ||||| | || ||||||||| |||| || ||
Sbjct 205045 GGTGATGAAGGGCACACGAGCCTCCCCCGCGGTTGCCTTGGCGAGAAGCATCTTGCCAGT 204986
Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596
|| || ||| | ||| ||||| |||| |||| | ||||| |||
Sbjct 204985 ACTGGGAGAACCTGTGAGCAGGGCTCCCCTTGGAGTTTTGGCCCCA 204940
>seq29163
Length=2664742
Score = 89.7 bits (98), Expect = 6e-13
Identities = 77/93 (83%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026
||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| ||
Sbjct 303114 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 303055
Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059
|| ||| |||||||||||||||||||||||
Sbjct 303054 CAGTGAAATATTTTCCATAAAGTCAAATGGATT 303022
>seq39996
Length=45000
Score = 86.0 bits (94), Expect = 7e-12
Identities = 249/377 (66%), Gaps = 10/377 (3%)
Strand=Plus/Plus
Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244
|| || ||| || || ||||| ||||| || || ||| ||||| | ||| || ||
Sbjct 6571 GACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGGACGGTT 6630
Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301
|| |||||||||| | || ||| ||||| || || || ||||| || ||
Sbjct 6631 GGTGGCGGCGATGAGGATGATGCCT---TCATTCGCCTCGAAGCCGTCCATTTCGACCAG 6687
Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT-ACCACCAGCACTGCGTT 9360
|| ||||| | || ||||| || || || || | | || | ||| || | || |
Sbjct 6688 CAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACC-GCCACCAAGACCGGCGCCACGAT 6746
Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420
| || ||||| || || || || ||||||| || || ||| ||| | |||
Sbjct 6747 GGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTGGCTT 6806
Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480
|| || | || || || | | ||||| || || || ||||| ||||| |||| |
Sbjct 6807 GCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAGTCCG 6866
Query 9481 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539
||||| || | || ||| || ||||| | |||||| || | || || || |||||
Sbjct 6867 AACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAGAAGC 6925
Query 9540 GTCTTACCCGTACCTGG 9556
|||||||||||||| ||
Sbjct 6926 GTCTTACCCGTACCGGG 6942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589410583556800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |