Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq43885 89.7 6e-13 seq29163 89.7 6e-13 seq39996 86.0 7e-12 >seq43885 Length=2353850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| ||| |||| | Sbjct 205164 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 205105 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || |||||| | ||| ||| ||||||||||||||| || | | | ||| Sbjct 205104 TCACGAACCAGAGCTGGGCCAACAGCAACAAACATCTCCAGGAACTCAG-ACCTATTCAT 205046 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || ||||| | || ||||||||| |||| || || Sbjct 205045 GGTGATGAAGGGCACACGAGCCTCCCCCGCGGTTGCCTTGGCGAGAAGCATCTTGCCAGT 204986 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 || || ||| | ||| ||||| |||| |||| | ||||| ||| Sbjct 204985 ACTGGGAGAACCTGTGAGCAGGGCTCCCCTTGGAGTTTTGGCCCCA 204940 >seq29163 Length=2664742 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026 ||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| || Sbjct 303114 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 303055 Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 || ||| ||||||||||||||||||||||| Sbjct 303054 CAGTGAAATATTTTCCATAAAGTCAAATGGATT 303022 >seq39996 Length=45000 Score = 86.0 bits (94), Expect = 7e-12 Identities = 249/377 (66%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||| || || ||||| ||||| || || ||| ||||| | ||| || || Sbjct 6571 GACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGGACGGTT 6630 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301 || |||||||||| | || ||| ||||| || || || ||||| || || Sbjct 6631 GGTGGCGGCGATGAGGATGATGCCT---TCATTCGCCTCGAAGCCGTCCATTTCGACCAG 6687 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT-ACCACCAGCACTGCGTT 9360 || ||||| | || ||||| || || || || | | || | ||| || | || | Sbjct 6688 CAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACC-GCCACCAAGACCGGCGCCACGAT 6746 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 | || ||||| || || || || ||||||| || || ||| ||| | ||| Sbjct 6747 GGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTGGCTT 6806 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 || || | || || || | | ||||| || || || ||||| ||||| |||| | Sbjct 6807 GCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAGTCCG 6866 Query 9481 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 ||||| || | || ||| || ||||| | |||||| || | || || || ||||| Sbjct 6867 AACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAGAAGC 6925 Query 9540 GTCTTACCCGTACCTGG 9556 |||||||||||||| || Sbjct 6926 GTCTTACCCGTACCGGG 6942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589410583556800