Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq70400 109 1e-19 >seq70400 Length=74324 Score = 109 bits (120), Expect = 1e-19 Identities = 283/423 (67%), Gaps = 15/423 (4%) Strand=Plus/Plus Query 35784 CAACGTTTGCAAGATAACGGCAAAAGTGTTGCCTTTATCGTGC--GACAACAAATTCTTC 35841 |||| ||| || ||| || | || |||| || |||||||| ||||| | |||||| Sbjct 29301 CAACTTTTTCATGATTACTTCGAATGTGTGACCCTTATCGTGATTGACAAGA--TTCTTC 29358 Query 35842 ACGTTTTCCAACACGAAGGCCGCAGGTCGCTTCGCTGCGATGATCCGGGCTACGTCGAAA 35901 ||||| || | | |||||| || | | | |||||| || || || || || Sbjct 29359 ACGTTCTCAAGTAGAAAGGCCTTGGGCTGGTGATGTTTGATGATGCGTGCGACATCAAAG 29418 Query 35902 AATAGAGTGCCCTGAGTAGTGCACTCGAAGCCGTGCGGGCGGCCCAGTGAGTTCTTTTTG 35961 || ||||| ||||| || | | |||||||||| | ||||||| | |||||| || Sbjct 29419 AAAAGAGTTCCCTGCGTCTCGTCCGCGAAGCCGTGGGCACGGCCCAAGGCGTTCTTCTTA 29478 Query 35962 CTTACTCCCGCGATACTAAACGGCTGGCAAGGGAAGCCGGCAAGCAAGACGTCATGAGTT 36021 ||||| || |||||||| ||||||||||| || || || || || || | ||| || | Sbjct 29479 CTTACGCCGGCGATACTGAACGGCTGGCAGGGAAATCCTGCCAGTAAAATGTCGTGTGCC 29538 Query 36022 GGCACACTTTCGGCCG---CGAATGGGACGATGTCACCGATGAAAGGATGATGGTCGC-- 36076 || | | ||||| | ||| | ||||||||| ||| ||||| ||||| Sbjct 29539 GGGA---TGTCGGCAGCGTCGACTTTCGTGATGTCACCTTTGACTTCATGATCGTCGCAG 29595 Query 36077 CGA-AGTTATCGACGTACGTCTTCTTCGAAAAGTCGTTCCACTCGCTAGTGAATACGCAT 36135 ||| | || | ||| || || ||| | | | ||| || || || |||||| Sbjct 29596 CGATAATTCGCCTTGTAAGTTGCCTGTGAATATTTATCCCATTCTGAGGTAAAAACGCAT 29655 Query 36136 TCACCGCC-ATGAGCCTCAAAACCAAGGCGAATGCCACCGATTCCGGCGAACAGATCGAT 36194 | || || ||| | || || ||| |||| | || |||||||| ||||| ||||| || Sbjct 29656 TTCCCACCGATGTG-GTCGAACCCACGGCGCAGTCCGCCGATTCCAGCGAATAGATCAAT 29714 Query 36195 GAA 36197 || Sbjct 29715 AAA 29717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129535354571280