Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq66703 233 1e-56 >seq66703 Length=1304 Score = 233 bits (258), Expect = 1e-56 Identities = 243/315 (77%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 46143 ATGAGTGTGCATACATGGACGTAAGCAACCCTT-TGAGAACTCTCCCGGATTCCAGAAGG 46201 |||||| |||||||| |||||||| || ||| | ||| ||||| || ||||| |||||| Sbjct 614 ATGAGTATGCATACAAGGACGTAAACATCCCATATGA-AACTCACCTGGATTGTAGAAGG 556 Query 46202 TTAGAATTTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGGCTAGTT 46261 |||||||||| || || |||||||| || ||| || |||| ||| ||||| || | Sbjct 555 TTAGAATTTCACCTCGGTCATCAATACCGTTTCGCAAGTTATCATAGATCTTATGAAGCT 496 Query 46262 GGTCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTC 46321 |||||||| || | |||||| |||| || || || |||||||| ||||| | Sbjct 495 GGTCAAACTCCTCTCCTACTGAATTACGCCACCTGCGCCCCTGTACACCATAAACTCGGC 436 Query 46322 CCATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCAT 46381 |||||||||||| ||||||||| || ||||| ||| ||||||| |||||||| |||| Sbjct 435 CCATATCATCCTTACCTTTACGATAAGGATTAGCTAACCAAGCTTCATTTTCATTGGCAT 376 Query 46382 TAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACCCACGTA 46441 |||| |||||||| ||| |||||||| || || || ||||| ||||| ||||||| Sbjct 375 TAGCGTTCCATGTATTACATCCAATAGCTCGAAACTGAGCTGCGCTATCATAACCACGTA 316 Query 46442 GATACCC-AATCATT 46455 ||||||| ||| ||| Sbjct 315 GATACCCTAATAATT 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378241632530240