Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 131 1e-25
seq37082 93.3 3e-14
seq33366 91.5 1e-13
seq42836 86.0 4e-12
>seq75383
Length=1910755
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| ||||||||||| |||||||| || || | ||||||||| | ||
Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||| ||||| ||||| |||||| | || | |||| || ||| ||
Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169965
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | ||| ||||| || ||||| | |||||||| |||||||||||
Sbjct 169964 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 169214 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 169155
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 169154 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 169095
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 169094 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169035
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 169034 CCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 169442 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 169383
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 169382 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 169323
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 169322 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169263
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 169262 CCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 169670 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 169611
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 169610 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 169551
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 169550 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169491
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 169490 CCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 169898 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 169839
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 169838 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 169779
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 169778 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169719
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 169718 CCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 168986 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 168927
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || | | ||||||||| | || | || || || ||
Sbjct 168926 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGT 168867
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|||||| ||||| || || || | |||| | ||| || || | || |||||||
Sbjct 168866 ATCTTCACCTTGAC--ATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGTTT 168809
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| ||||| ||||||||||||||
Sbjct 168808 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 168778
>seq37082
Length=86608
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| || || ||||| || || | | |||| ||||||| ||| |||| ||
Sbjct 35229 TCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCTTTGCCGGAGAAG 35288
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| | || | ||||||| ||| || || | ||||
Sbjct 35289 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTGGCTCTGACACTC 35348
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| || ||| || || | ||| ||||| || ||| | || |||||||||
Sbjct 35349 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACA 35408
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 35409 AAGATCTGCAT 35419
>seq33366
Length=1752596
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||| || || ||||| | || |||| |||||||| || ||||||||
Sbjct 780138 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 780079
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | || ||||| || ||||| || || ||
Sbjct 780078 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--AT 780021
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| || ||| || || | ||| ||||| || || || || || ||||
Sbjct 780020 TCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCA 779961
Query 34969 CAAAGATCTGCATATT 34984
| ||||| ||||| ||
Sbjct 779960 CGAAGATTTGCATTTT 779945
>seq42836
Length=1893264
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/219 (69%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
||||| || || |||| ||| || || |||||||| ||||| || | | ||| ||
Sbjct 1011599 CTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 1011540
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| |||| || || || ||||| || |||| ||||||||| | || | || |||||
Sbjct 1011539 TCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 1011480
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
|| ||||| | || | |||| | ||| || ||| || | || || |||
Sbjct 1011479 TCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGATG 1011420
Query 34947 GTTTTTCCCGTGA-GAGTCTTCACAAAGATCTGCATATT 34984
|| || || || | ||||||||||||| |||||||| ||
Sbjct 1011419 GTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324327685584960
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