Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_016765.1
Length=54024
Score E
Sequences producing significant alignments: (Bits) Value
seq74126 140 1e-28
seq18039 116 1e-21
seq17619 98.7 3e-16
seq24916 86.0 2e-12
>seq74126
Length=69924
Score = 140 bits (154), Expect = 1e-28
Identities = 387/583 (66%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 12575 TATCAGCGGCAGATAGCGCTGATCAACACGGAAGTCGACAAGCGCAAGGATGCCACCGAG 12634
||||||||||| || | |||||||||||| |||||||| || | || || ||
Sbjct 26427 TATCAGCGGCAAATTGAGCTGATCAACACCACCACCGACAAGCAGAAAAACGCTACTGAA 26486
Query 12635 GTGGCAAAGCTTCAGTTCGAAAT--CGAGTCGGGCAAGCTGGTTGGAATCAATGCCGAGC 12692
|| || ||||| || || || | ||| |||||| ||||||| ||||||||| |||
Sbjct 26487 GTCGCCAAGCTGGCCTTTGAGATTACCAGT--GGCAAGTTGGTTGGCATCAATGCCAAGC 26544
Query 12693 AGCAGAAACGCCTGAATGGCTTGGCAGAAGAGCTTGACCGCCTGAAGCAACTGAAGCAGG 12752
|||| ||||||| | ||| |||| | ||||| ||| |||||| | | ||| |
Sbjct 26545 AGCAACAACGCCTCGAAGGCCTGGCCGCCGAGCTGGACGCCCTGAACAAGATCAAGGCCG 26604
Query 12753 CGAACGAGGATGCAGCGAAGGCTC-AGGCCTTCCGTGCAACGCTCAATGAATCGA-ACGC 12810
| | || || || || || |||| |||||| |||| ||||| | |||| | |
Sbjct 26605 CCACGGAAGACGCCGCCAA-GCTCTCCGCCTTCGACTCAACCCTCAA--ACTCGATATCC 26661
Query 12811 A-ACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12869
| || | || ||||| |||| || | || | || |||| |||||| |
Sbjct 26662 AGACCCAGTCCGATGGCTTTGCACTTGAGCTTGAAGGTGCAGGGCGCGGTGACAAGTACA 26721
Query 12870 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12929
|| ||| || | | |||| ||||||||| || | |||||| ||| | ||| |
Sbjct 26722 AGGCGCGCTTGAAGGAAACGCTGGCGATCCAGCAAGACTTCAACAAGCAGATGCGCGACC 26781
Query 12930 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12989
| ||| ||||| ||||||| |||||||| | |||||||| ||||| || |
Sbjct 26782 TGCAGGAGCAGCAGAACAGCGGGAAAATCAGCGAAAGCCTCTACGAGAGCGAAACAGAGC 26841
Query 12990 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTACTAC--GCGGCTCA 13047
| || | || | || || |||| || ||||| || || ||| | ||||
Sbjct 26842 TGCTCAATGAAGCGTTGGCGACCCGGCTGGTCATGCAGCAGGACTATTACAACCAGCTC- 26900
Query 13048 GGATGAGGCTCAGAGCAACTGGCTGGATGGCGTCACGTCTGCCTGGGAGAACTACCGCGA 13107
||| | || ||| |||||| |||||||||| | ||||||||||| | ||| | ||
Sbjct 26901 -GATCAAGCACAGTCGAACTGGTTGGATGGCGTTTCCTCTGCCTGGGAAAGCTATCTGGA 26959
Query 13108 CACGGCCACGGATTATCAACAGCAGGCTGCCGATTTCACCACG 13150
|||||||| || ||| ||||| || |||| ||||||
Sbjct 26960 AACGGCCACCGACTATAGCCAGCAAGCGAGCGATGCGACCACG 27002
Score = 129 bits (142), Expect = 2e-25
Identities = 394/593 (66%), Gaps = 27/593 (5%)
Strand=Plus/Plus
Query 17565 GACCGTATCGCGGCGCAGACAGAAAGCCGCGTCTCGGTAGAGGCTACCCGCATGCTACCG 17624
||||| || ||||||| | ||||||| ||| || ||||| || || | || |||
Sbjct 31114 GACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGTGTCGAGGCAACACGTGTACTGCCG 31173
Query 17625 ACTCGGCAGAACGGTGCATGGACACCCGAGATAGCAACGCGAGACATCGTCCCATTCCTC 17684
|| | |||||| ||| || |||| | | ||||| || ||||| || | ||
Sbjct 31174 GTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCGACGCGGGATATCGTGCCGTGGTTC 31233
Query 17685 TGCTACATCGCGAAGGAACGCGGCTACACCGATGCGGATCTCGATCTTGAGGAACTCGAT 17744
||||||||| ||| ||||||||||||||| ||||| ||||| | || || ||
Sbjct 31234 CTCTACATCGCAAAGTCGGCCGGCTACACCGATGCCGATCTGGATCTGGTCGAGCTGGAC 31293
Query 17745 CGGCTGGACGCAATCTGGA--AGGCCCGCGGCGACACGTTCGACAT---GATCTACGAGG 17799
|| || | | || || | || ||||||||||| || ||||| ||| | || |
Sbjct 31294 CGACTTCATG--ATGTGTACCGCGCACGCGGCGACACCTTTGACATGACGATTGATGACG 31351
Query 17800 ACGGCAAGGTAACTGTCGCGCAGATCATGGATGACGTGCTTGCGGCCGGATATGCGGAGA 17859
| | | ||| | | |||| ||| | |||| ||| || ||||| | | ||
Sbjct 31352 CCAGTACGGTCAAAGACGCG------ATGAACGACGCGCTGGCCGCCGGGTTCTCAGAAC 31405
Query 17860 AGACCATTAAGCGCGGCGTGATCTCTG-CGGCCCGAGACGAGCCAAGGACCACATTCGGG 17918
|||||| || ||||| || | ||| ||| || |||||||| | || |||| |
Sbjct 31406 TGACCATCAACCGCGGGCTGCT-GCTGCCGGTGCGCGACGAGCCGCGCACGCAGTTCGAG 31464
Query 17919 CACATGTACTCGCCGCAGAACATG--GATGGTCCACTGAGGATCAGCATCAGCGCGCCGT 17976
||||||||| |||||||||||||| | | || | | | || | | | || |
Sbjct 31465 CACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAACG-CCAACTGGTGTTC-CCAT 31522
Query 17977 CTGAG-GACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTGG--ATCG 18033
| ||| ||||| | ||||| || ||||| |||| | ||| | | | |||| || |
Sbjct 31523 C-GAGCGACGATTTTGACGGTGTTGATGTCGAGTACTTCAGCTCGATCACCTGGGCATGG 31581
Query 18034 AAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCGAGAAGATCACGG 18093
|| |||||| | |||||| ||| || || |||||| |||||||||||| ||| ||
Sbjct 31582 --GAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAACAAGGTCGAGAAGGTCAAGG 31639
Query 18094 CTGTC-GGCGTGACAGACCGTAACAGGGCGTGGCGATACGGAATGCGCCGCCG 18145
|| | ||| | | || || | | | || ||||| ||| |||||||||||
Sbjct 31640 -TGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGCATGCGCCGCCG 31691
Score = 86.0 bits (94), Expect = 2e-12
Identities = 127/179 (71%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 9908 AGGCCAGAGATGCAGCAAAGGCCATCAGGGACGCAATTGAGCTTTCAGCTTATGTAGTCC 9967
||||| | || | || || |||||||| |||| ||||| || || || | | |
Sbjct 22636 AGGCCCGTGACGTTGCCAAAGCCATCAGAAACGCTATTGAACTGAAGGCCAATATTGCAC 22695
Query 9968 GCTGGGGAGGGGAGTCTGTTGACCCTGATACCAAGACCTACCGAGTCAGCTTTGACGTCG 10027
||||||| || || || ||||| | |||||||||||||| |||||| || || |
Sbjct 22696 GCTGGGGCGGCGATTCACACGACCCGGCGACCAAGACCTACCGCTACAGCTTCGATGTGG 22755
Query 10028 ACTGGATAGTCCAGCGATAGACCAACCAATACCGACCAACCCGCCTTGAGCGGGttttt 10086
| ||| | || | ||| || ||||| || || ||| ||||||||||||||| ||||
Sbjct 22756 ATTGGCTGGTACCGCGCTAAACCAA-CACCGCCCCCCAGCCCGCCTTGAGCGGGCTTTT 22813
Score = 80.6 bits (88), Expect = 9e-11
Identities = 79/102 (77%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 13528 TGGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAA 13587
||||||||| || | || || ||| | |||||| |||| ||||||||||| ||| | ||
Sbjct 27563 TGGCATGGCGCATAACGGCATCGATTCGGTTCCGCAGACGGGCACCTGGTTGCTCGAAAA 27622
Query 13588 GGGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGA 13629
||||||| |||| || || || | || ||||| || |||||
Sbjct 27623 GGGCGAGCGGGTCACCACAGCTCAAACCAGCGCCAAACTCGA 27664
>seq18039
Length=443000
Score = 116 bits (128), Expect = 1e-21
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 11626 GGTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGG 11685
||| || |||||| || |||||||| ||||| |||||||| || || || | ||
Sbjct 168889 GGTCGGTATTGAGGGTGACAAGCTTGCCGACATTTTCAAGGATGTGAATGATCGCATCGG 168830
Query 11686 CGACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAA 11745
||||||| | ||||||||||| || | |||||||||||||| | ||||||||
Sbjct 168829 CGACTTCAATCAGACCGGCGGTGGTCCGATGAAGGATTTCTTCGAGAATATTGCGCCTAA 168770
Query 11746 AGTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCT---TGGCTT 11802
|| ||| |||| |||||| ||| | |||| ||| || ||||| || ||
Sbjct 168769 GGTCGGCCTGACGGCAGACGCGTTTAAAAGTCTGTCCGGTCCGCAGGCTCTGCAACTCTA 168710
Query 11803 GTACGTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGA 11862
|||| | || || | ||||| | || ||| | | |||||||||||||||||
Sbjct 168709 TTACGAC---AGTCTCAAGAAGGCTGGCGCCAATCAGCAGCAGATGACCTTCTATCTTGA 168653
Query 11863 GGCTATTGCGAGCGATGCGACTGCGCTGCTCCCGCT 11898
|||||| ||| ||| || || || || |||||||
Sbjct 168652 GGCTATGGCGTCCGACGCTACGGCTCTTATCCCGCT 168617
>seq17619
Length=248000
Score = 98.7 bits (108), Expect = 3e-16
Identities = 214/310 (69%), Gaps = 8/310 (3%)
Strand=Plus/Plus
Query 4918 TCGAACTCCGTCGAGTACGTCCGC-GAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTC 4976
|| ||| || |||||| | ||| ||||| |||||| ||| || || || || || |
Sbjct 34744 TCAAACGCCATCGAGTG-GCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGC 34802
Query 4977 GGAAGGCACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCG 5036
||||| | ||| || || || || ||||| ||||| ||| || ||||| ||
Sbjct 34803 AGAAGGTGCTGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGT 34862
Query 5037 CACCATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGC-CTTGC 5095
|| ||||| ||||| ||||||| ||| |||||| |||| ||||| | || |||||
Sbjct 34863 GACGATCGCGCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCTTGC 34922
Query 5096 AGAGCTACATCGATGCG-CGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAAGGTCAACT 5153
| ||||| || ||| |||| ||| |||||||| | ||||||||| ||| ||
Sbjct 34923 CGCA-TACATTGA-GCGACGCGG-CGTCTACGGCCTTCAGACCGTCGAAGAAAATCAGCT 34979
Query 5154 GCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTA 5213
|| |||| || || ||| || || | |||||||||||||||||| || |
Sbjct 34980 CCTGAACGGTTCTGGCACTGGCCAGAACCTTAAGGGCATCATTCCGCAGGCAACTGCTTT 35039
Query 5214 CGCGCCGCCG 5223
|||||| ||
Sbjct 35040 TGCGCCGACG 35049
>seq24916
Length=478
Score = 86.0 bits (94), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 10509 CGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCA 10568
|||||||||||| ||| || || ||||| ||| ||||||||| || || ||||
Sbjct 30 CGCGCACCTGGTGCGTGTTTGAAGGTTATGTCGCCGATTTCCCGTTCACCTTCGCGGCCA 89
Query 10569 ACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGATTCGCA 10628
| || ||||| | || || | |||||||||| ||||||||| |||||||||||| |
Sbjct 90 ATGCCGTGGTCGCGTCCACTGTTTCCATTCAGCGTTCCGGCGGTCTCGCCTGGATTCGTA 149
Query 10629 AA 10630
||
Sbjct 150 AA 151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 172596580494240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |