Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq74126 140 1e-28 seq18039 116 1e-21 seq17619 98.7 3e-16 seq24916 86.0 2e-12 >seq74126 Length=69924 Score = 140 bits (154), Expect = 1e-28 Identities = 387/583 (66%), Gaps = 14/583 (2%) Strand=Plus/Plus Query 12575 TATCAGCGGCAGATAGCGCTGATCAACACGGAAGTCGACAAGCGCAAGGATGCCACCGAG 12634 ||||||||||| || | |||||||||||| |||||||| || | || || || Sbjct 26427 TATCAGCGGCAAATTGAGCTGATCAACACCACCACCGACAAGCAGAAAAACGCTACTGAA 26486 Query 12635 GTGGCAAAGCTTCAGTTCGAAAT--CGAGTCGGGCAAGCTGGTTGGAATCAATGCCGAGC 12692 || || ||||| || || || | ||| |||||| ||||||| ||||||||| ||| Sbjct 26487 GTCGCCAAGCTGGCCTTTGAGATTACCAGT--GGCAAGTTGGTTGGCATCAATGCCAAGC 26544 Query 12693 AGCAGAAACGCCTGAATGGCTTGGCAGAAGAGCTTGACCGCCTGAAGCAACTGAAGCAGG 12752 |||| ||||||| | ||| |||| | ||||| ||| |||||| | | ||| | Sbjct 26545 AGCAACAACGCCTCGAAGGCCTGGCCGCCGAGCTGGACGCCCTGAACAAGATCAAGGCCG 26604 Query 12753 CGAACGAGGATGCAGCGAAGGCTC-AGGCCTTCCGTGCAACGCTCAATGAATCGA-ACGC 12810 | | || || || || || |||| |||||| |||| ||||| | |||| | | Sbjct 26605 CCACGGAAGACGCCGCCAA-GCTCTCCGCCTTCGACTCAACCCTCAA--ACTCGATATCC 26661 Query 12811 A-ACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12869 | || | || ||||| |||| || | || | || |||| |||||| | Sbjct 26662 AGACCCAGTCCGATGGCTTTGCACTTGAGCTTGAAGGTGCAGGGCGCGGTGACAAGTACA 26721 Query 12870 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12929 || ||| || | | |||| ||||||||| || | |||||| ||| | ||| | Sbjct 26722 AGGCGCGCTTGAAGGAAACGCTGGCGATCCAGCAAGACTTCAACAAGCAGATGCGCGACC 26781 Query 12930 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12989 | ||| ||||| ||||||| |||||||| | |||||||| ||||| || | Sbjct 26782 TGCAGGAGCAGCAGAACAGCGGGAAAATCAGCGAAAGCCTCTACGAGAGCGAAACAGAGC 26841 Query 12990 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTACTAC--GCGGCTCA 13047 | || | || | || || |||| || ||||| || || ||| | |||| Sbjct 26842 TGCTCAATGAAGCGTTGGCGACCCGGCTGGTCATGCAGCAGGACTATTACAACCAGCTC- 26900 Query 13048 GGATGAGGCTCAGAGCAACTGGCTGGATGGCGTCACGTCTGCCTGGGAGAACTACCGCGA 13107 ||| | || ||| |||||| |||||||||| | ||||||||||| | ||| | || Sbjct 26901 -GATCAAGCACAGTCGAACTGGTTGGATGGCGTTTCCTCTGCCTGGGAAAGCTATCTGGA 26959 Query 13108 CACGGCCACGGATTATCAACAGCAGGCTGCCGATTTCACCACG 13150 |||||||| || ||| ||||| || |||| |||||| Sbjct 26960 AACGGCCACCGACTATAGCCAGCAAGCGAGCGATGCGACCACG 27002 Score = 129 bits (142), Expect = 2e-25 Identities = 394/593 (66%), Gaps = 27/593 (5%) Strand=Plus/Plus Query 17565 GACCGTATCGCGGCGCAGACAGAAAGCCGCGTCTCGGTAGAGGCTACCCGCATGCTACCG 17624 ||||| || ||||||| | ||||||| ||| || ||||| || || | || ||| Sbjct 31114 GACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGTGTCGAGGCAACACGTGTACTGCCG 31173 Query 17625 ACTCGGCAGAACGGTGCATGGACACCCGAGATAGCAACGCGAGACATCGTCCCATTCCTC 17684 || | |||||| ||| || |||| | | ||||| || ||||| || | || Sbjct 31174 GTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCGACGCGGGATATCGTGCCGTGGTTC 31233 Query 17685 TGCTACATCGCGAAGGAACGCGGCTACACCGATGCGGATCTCGATCTTGAGGAACTCGAT 17744 ||||||||| ||| ||||||||||||||| ||||| ||||| | || || || Sbjct 31234 CTCTACATCGCAAAGTCGGCCGGCTACACCGATGCCGATCTGGATCTGGTCGAGCTGGAC 31293 Query 17745 CGGCTGGACGCAATCTGGA--AGGCCCGCGGCGACACGTTCGACAT---GATCTACGAGG 17799 || || | | || || | || ||||||||||| || ||||| ||| | || | Sbjct 31294 CGACTTCATG--ATGTGTACCGCGCACGCGGCGACACCTTTGACATGACGATTGATGACG 31351 Query 17800 ACGGCAAGGTAACTGTCGCGCAGATCATGGATGACGTGCTTGCGGCCGGATATGCGGAGA 17859 | | | ||| | | |||| ||| | |||| ||| || ||||| | | || Sbjct 31352 CCAGTACGGTCAAAGACGCG------ATGAACGACGCGCTGGCCGCCGGGTTCTCAGAAC 31405 Query 17860 AGACCATTAAGCGCGGCGTGATCTCTG-CGGCCCGAGACGAGCCAAGGACCACATTCGGG 17918 |||||| || ||||| || | ||| ||| || |||||||| | || |||| | Sbjct 31406 TGACCATCAACCGCGGGCTGCT-GCTGCCGGTGCGCGACGAGCCGCGCACGCAGTTCGAG 31464 Query 17919 CACATGTACTCGCCGCAGAACATG--GATGGTCCACTGAGGATCAGCATCAGCGCGCCGT 17976 ||||||||| |||||||||||||| | | || | | | || | | | || | Sbjct 31465 CACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAACG-CCAACTGGTGTTC-CCAT 31522 Query 17977 CTGAG-GACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTGG--ATCG 18033 | ||| ||||| | ||||| || ||||| |||| | ||| | | | |||| || | Sbjct 31523 C-GAGCGACGATTTTGACGGTGTTGATGTCGAGTACTTCAGCTCGATCACCTGGGCATGG 31581 Query 18034 AAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCGAGAAGATCACGG 18093 || |||||| | |||||| ||| || || |||||| |||||||||||| ||| || Sbjct 31582 --GAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAACAAGGTCGAGAAGGTCAAGG 31639 Query 18094 CTGTC-GGCGTGACAGACCGTAACAGGGCGTGGCGATACGGAATGCGCCGCCG 18145 || | ||| | | || || | | | || ||||| ||| ||||||||||| Sbjct 31640 -TGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGCATGCGCCGCCG 31691 Score = 86.0 bits (94), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 9908 AGGCCAGAGATGCAGCAAAGGCCATCAGGGACGCAATTGAGCTTTCAGCTTATGTAGTCC 9967 ||||| | || | || || |||||||| |||| ||||| || || || | | | Sbjct 22636 AGGCCCGTGACGTTGCCAAAGCCATCAGAAACGCTATTGAACTGAAGGCCAATATTGCAC 22695 Query 9968 GCTGGGGAGGGGAGTCTGTTGACCCTGATACCAAGACCTACCGAGTCAGCTTTGACGTCG 10027 ||||||| || || || ||||| | |||||||||||||| |||||| || || | Sbjct 22696 GCTGGGGCGGCGATTCACACGACCCGGCGACCAAGACCTACCGCTACAGCTTCGATGTGG 22755 Query 10028 ACTGGATAGTCCAGCGATAGACCAACCAATACCGACCAACCCGCCTTGAGCGGGttttt 10086 | ||| | || | ||| || ||||| || || ||| ||||||||||||||| |||| Sbjct 22756 ATTGGCTGGTACCGCGCTAAACCAA-CACCGCCCCCCAGCCCGCCTTGAGCGGGCTTTT 22813 Score = 80.6 bits (88), Expect = 9e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13528 TGGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAA 13587 ||||||||| || | || || ||| | |||||| |||| ||||||||||| ||| | || Sbjct 27563 TGGCATGGCGCATAACGGCATCGATTCGGTTCCGCAGACGGGCACCTGGTTGCTCGAAAA 27622 Query 13588 GGGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGA 13629 ||||||| |||| || || || | || ||||| || ||||| Sbjct 27623 GGGCGAGCGGGTCACCACAGCTCAAACCAGCGCCAAACTCGA 27664 >seq18039 Length=443000 Score = 116 bits (128), Expect = 1e-21 Identities = 192/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 11626 GGTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGG 11685 ||| || |||||| || |||||||| ||||| |||||||| || || || | || Sbjct 168889 GGTCGGTATTGAGGGTGACAAGCTTGCCGACATTTTCAAGGATGTGAATGATCGCATCGG 168830 Query 11686 CGACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAA 11745 ||||||| | ||||||||||| || | |||||||||||||| | |||||||| Sbjct 168829 CGACTTCAATCAGACCGGCGGTGGTCCGATGAAGGATTTCTTCGAGAATATTGCGCCTAA 168770 Query 11746 AGTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCT---TGGCTT 11802 || ||| |||| |||||| ||| | |||| ||| || ||||| || || Sbjct 168769 GGTCGGCCTGACGGCAGACGCGTTTAAAAGTCTGTCCGGTCCGCAGGCTCTGCAACTCTA 168710 Query 11803 GTACGTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGA 11862 |||| | || || | ||||| | || ||| | | ||||||||||||||||| Sbjct 168709 TTACGAC---AGTCTCAAGAAGGCTGGCGCCAATCAGCAGCAGATGACCTTCTATCTTGA 168653 Query 11863 GGCTATTGCGAGCGATGCGACTGCGCTGCTCCCGCT 11898 |||||| ||| ||| || || || || ||||||| Sbjct 168652 GGCTATGGCGTCCGACGCTACGGCTCTTATCCCGCT 168617 >seq17619 Length=248000 Score = 98.7 bits (108), Expect = 3e-16 Identities = 214/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 4918 TCGAACTCCGTCGAGTACGTCCGC-GAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTC 4976 || ||| || |||||| | ||| ||||| |||||| ||| || || || || || | Sbjct 34744 TCAAACGCCATCGAGTG-GCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGC 34802 Query 4977 GGAAGGCACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCG 5036 ||||| | ||| || || || || ||||| ||||| ||| || ||||| || Sbjct 34803 AGAAGGTGCTGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGT 34862 Query 5037 CACCATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGC-CTTGC 5095 || ||||| ||||| ||||||| ||| |||||| |||| ||||| | || ||||| Sbjct 34863 GACGATCGCGCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCTTGC 34922 Query 5096 AGAGCTACATCGATGCG-CGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAAGGTCAACT 5153 | ||||| || ||| |||| ||| |||||||| | ||||||||| ||| || Sbjct 34923 CGCA-TACATTGA-GCGACGCGG-CGTCTACGGCCTTCAGACCGTCGAAGAAAATCAGCT 34979 Query 5154 GCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTA 5213 || |||| || || ||| || || | |||||||||||||||||| || | Sbjct 34980 CCTGAACGGTTCTGGCACTGGCCAGAACCTTAAGGGCATCATTCCGCAGGCAACTGCTTT 35039 Query 5214 CGCGCCGCCG 5223 |||||| || Sbjct 35040 TGCGCCGACG 35049 >seq24916 Length=478 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 10509 CGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCA 10568 |||||||||||| ||| || || ||||| ||| ||||||||| || || |||| Sbjct 30 CGCGCACCTGGTGCGTGTTTGAAGGTTATGTCGCCGATTTCCCGTTCACCTTCGCGGCCA 89 Query 10569 ACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGATTCGCA 10628 | || ||||| | || || | |||||||||| ||||||||| |||||||||||| | Sbjct 90 ATGCCGTGGTCGCGTCCACTGTTTCCATTCAGCGTTCCGGCGGTCTCGCCTGGATTCGTA 149 Query 10629 AA 10630 || Sbjct 150 AA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172596580494240