Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_017975.1 Length=167292 Score E Sequences producing significant alignments: (Bits) Value seq66703 132 5e-26 >seq66703 Length=1304 Score = 132 bits (146), Expect = 5e-26 Identities = 483/743 (65%), Gaps = 69/743 (9%) Strand=Plus/Minus Query 96727 TTCTAGTTGGTCTTCGTAGATATGAACGTTAACTAGTTTATGACCCGCTGTCTTAGGCTT 96786 || || ||| ||||| || ||||| | || || | |||||| ||| | | || Sbjct 806 TTGTAATTGATCTTCATAAATATGTGCATTTACGATCTTATGATAAGCTTTTCCGGCCTC 747 Query 96787 GTTGTTTGTAATTTGAGCCATAAGAGCAAGTAACGTAAATACTTGAACTTGATTAAATGC 96846 || | |||||||||||||| ||||| ||||| ||||| ||||||| |||||||| Sbjct 746 GTGGCCCGTAATTTGAGCCATGAGAGCTAGTAAGGTAAACACTTGAATCTGATTAAAATT 687 Query 96847 ACTACCTAAACAATGGT----CTGCTGAACGTTGATTACTATCT-AGGTATAACTTACCA 96901 |||||| |||| | ||||||||| | | | | | || | ||| ||| Sbjct 686 TTGACCTAA----TGGTACATCACATGAACGTTG-TGATGAAGTCAAATAAAGCTTGCCA 632 Query 96902 T-TAACTAAAGAGAAATG-ATGTTCATACATACACGGACGTAAGCAACCTAAATTAAATG 96959 |||| || || ||||| ||| || |||||| |||||||| || || | || ||| Sbjct 631 CCTAAC-AACGA-AAATGTATGAGTATGCATACAAGGACGTAAACATCCCATATGAAACT 574 Query 96960 CACCTGGATTCCACATTTGCCAGA-TCTCACCACGGTCATCAATACCATCTTTAAGATTA 97018 |||||||||| | | | ||| | ||||| |||||||||||||| | | | ||| Sbjct 573 CACCTGGATTGTAGAAG-GTTAGAATTTCACCTCGGTCATCAATACCGTTTCGCAAGTTA 515 Query 97019 TTATAAATCTTTTCTAGTTGGTCAAGACTACCAGTAATACATAACTTACCTGGGTTCTCT 97078 | ||| ||||| | || ||||||| ||| ||| ||| Sbjct 514 TCATAGATCTTATGAAGCTGGTCAA------------------ACT--CCT-----CTCC 480 Query 97079 TTAGACTCTCCAAGTATAGGCCAGTTGTTACCGACTGCACCATATACATAACCCATATCA 97138 | ||| | | || |||| || || | ||||||| || ||||||||| Sbjct 479 T---ACTG----AAT-TACGCCACCTGCGCCCCTGTACACCATAAACTCGGCCCATATCA 428 Query 97139 TCTTCGCCGCGACGAGACTCGTTAGCTAACCACGCTTCATTTAAGTTAGCATTAGCATCC 97198 || | || |||| | ||||||||||| ||||||||| || |||||||| | | Sbjct 427 TCCTTACCTTTACGATAAGGATTAGCTAACCAAGCTTCATTTTCATTGGCATTAGCGTTC 368 Query 97199 CAAGTTTTAGTTCC--TAACTTACGGAAGTCTTCTGCGTTAGTGTAACCACGAATGTAAC 97256 || || ||| ||| || || || || | ||||| || |||||||| | || | Sbjct 367 CATGTATTACATCCAATAGCT--CGAAACTGAGCTGCGCTATCATAACCACGTAGATACC 310 Query 97257 CTAGTAGTTCGGCTACGGCTGCTTTCCAATAACTCTTACGTGTAGTAAGCA--TCG-GTA 97313 ||| || ||| || | |||||||||||||||||||| || ||||| | | || ||| Sbjct 309 CTAATAATTCTGCGATAGCTGCTTTCCAATAACTCTTTCGAGTAGTTACTAAGNCGAGTA 250 Query 97314 GT---------ATAC----CTGCTTCAACATCATATTCCATGTTAGCACGTATAACAGTT 97360 || | || || | || | ||||| | | |||| ||||| ||| Sbjct 249 GTCACTAAAGGAAACTCATTAGCGCCTACGTTGTATTCTAAATCAGCATTAATAACGGTT 190 Query 97361 AGGCAACGTTTACCTGTACGTTCATTATATACCCATTCACCTTCTTCTACAATACGACGA 97420 | |||||| || || || |||||||| | |||||| |||| || || || ||||| || Sbjct 189 AAGCAACGCTTTCCAGTCCGTTCATTCTCGACCCATACACCCTCATCAACTATACGTTGA 130 Query 97421 CCTAAGTCTAAATAAGATTTCAT 97443 | ||| |||| ||| |||||| Sbjct 129 CATAAATCTAGATACTGTTTCAT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534689123014400