Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq65209 95.1 3e-15 seq6493 82.4 2e-11 >seq65209 Length=3338390 Score = 95.1 bits (104), Expect = 3e-15 Identities = 188/274 (69%), Gaps = 12/274 (4%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || || | | Sbjct 2239759 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 2239700 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 2239699 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 2239640 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| | | ||| || | |||| Sbjct 2239639 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAACTGCATAGCTCATTT 2239580 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 2239579 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAATTTTAGATGACACTG 2239526 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 2239525 AAAGGGGTTCCGGAGGCTTTGGTTCCACTGGAAG 2239492 >seq6493 Length=163338 Score = 82.4 bits (90), Expect = 2e-11 Identities = 185/274 (68%), Gaps = 12/274 (4%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| |||||| | || | || || | || | | Sbjct 143328 TTCCTTCTGGGTGCTATGGAAGAGCGGCTCCTCGTTCTAGCTTGGCAACAAAACACTTCA 143269 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| | |||||||| || ||| ||| | ||| | || ||||||||||| | | Sbjct 143268 TAGATGTAGAAGCTGGTGTCATAGATGAAGATTATAGAGTAAATGTTGGTGTTGTCCTGT 143209 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| | ||||| ||| | |||| Sbjct 143208 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 143149 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 143148 GTG-AATGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAATTTTAGATGACACTG 143095 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 143094 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 143061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138554266021920