Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 95.1 3e-15
seq6493 82.4 2e-11
>seq65209
Length=3338390
Score = 95.1 bits (104), Expect = 3e-15
Identities = 188/274 (69%), Gaps = 12/274 (4%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| | |||||| | || || || || || || | |
Sbjct 2239759 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 2239700
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 2239699 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 2239640
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || ||| | | || |||||| | | ||| || | ||||
Sbjct 2239639 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAACTGCATAGCTCATTT 2239580
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191
||| || || | |||| | ||| |||||| ||| ||| ||||| || | |
Sbjct 2239579 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAATTTTAGATGACACTG 2239526
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225
|||||||||| | ||| ||||| || || |||||
Sbjct 2239525 AAAGGGGTTCCGGAGGCTTTGGTTCCACTGGAAG 2239492
>seq6493
Length=163338
Score = 82.4 bits (90), Expect = 2e-11
Identities = 185/274 (68%), Gaps = 12/274 (4%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| |||||| | || | || || | || | |
Sbjct 143328 TTCCTTCTGGGTGCTATGGAAGAGCGGCTCCTCGTTCTAGCTTGGCAACAAAACACTTCA 143269
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| | |||||||| || ||| ||| | ||| | || ||||||||||| | |
Sbjct 143268 TAGATGTAGAAGCTGGTGTCATAGATGAAGATTATAGAGTAAATGTTGGTGTTGTCCTGT 143209
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || ||| | | || |||||| | ||||| ||| | ||||
Sbjct 143208 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 143149
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191
||| || || | |||| | ||| |||||| ||| ||| ||||| || | |
Sbjct 143148 GTG-AATGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAATTTTAGATGACACTG 143095
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225
|||||||||| | ||| ||||| || || |||||
Sbjct 143094 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 143061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138554266021920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |