Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq23535 266 1e-66 seq75598 114 4e-21 >seq23535 Length=854 Score = 266 bits (294), Expect = 1e-66 Identities = 527/779 (68%), Gaps = 52/779 (7%) Strand=Plus/Plus Query 3887 TGATGTAACCACAAATGGTGAA---AGTTTGAATTCAAAACCTACCGTAATTGAATTAGT 3943 |||||| || || ||||||||| | | ||| || ||||| |||||||| | || Sbjct 5 TGATGTCACAACGAATGGTGAATCAATTAACAATGTTAAGCCTACTTTAATTGAACTGGT 64 Query 3944 TGCCCATAATGTCGAAA---------GTACAGATTAAGCTGCCACCAAAACTTGTACCTG 3994 || | |||||| ||| || || ||| | || ||||| ||| | | || Sbjct 65 GGCACCCAATGTCAAAACAGCAGAAGGTGCAAATTGAACTACCACCTAAATTAATTCCGC 124 Query 3995 TCTTTTCTGC-TCAGGATGTGCGATACCGTCAAAGCTGGGGAGGAAGGGGTTCAGGTAAG 4053 | ||| | || || |||||| || | | ||||| || | || || | ||| Sbjct 125 TATTTAGCGAGTCCGG-TGTGCGCTATAGATCATCATGGGGTGGTCGTGGATCTGCCAAG 183 Query 4054 ACACGCTCGTTTGCAAAGATGACAGCCGTTAAAGGCTATATGTTTGCTGAAATGGGTGTA 4113 || || || |||||| ||||| || | || || ||||| ||||| || || | | Sbjct 184 ACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTATATCTTTGCAGA---GGCTCAA 240 Query 4114 A---GTGGAACTTTGCTTTGTGGTCGTGAGTTTATGAATACGCTTGCAGATTCTTCTATG 4170 | |||||| | || ||| ||||| || ||||| |||||| | || ||||| ||| Sbjct 241 ATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACACGCTTTCTGAATCTTCAATG 300 Query 4171 GAGGAAATTAAGCAAGCTATTC-GTGAAGAGCCATTTCTAAATAATTATTATGAGATGGG 4229 || ||||| ||||| || || | || | | |||||||| |||||||||||||| || || Sbjct 301 GAAGAAATCAAGCAGGCGATACAGTCCACA-CCATTTCTGAATAATTATTATGATATTGG 359 Query 4230 TAAAAACTACATAAGAACCAAGAATAAGCGCGTAACTTACTCATTTTGTGGTTTGCGTCA 4289 | ||| || ||| | ||||| || || | || | ||| ||| |||| | || || Sbjct 360 TGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTATGGCTTTGCTGGTCTACGGCA 419 Query 4290 TAACTTAGATAGCATCAAGTCTAAAGCACGTATTTTGCTTAGTTGGGTGGATGAGGCTGA 4349 |||| || | ||||| || |||||||| |||||||||||| | ||||| ||||||||||| Sbjct 420 TAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTTTGCTGGGTTGATGAGGCTGA 479 Query 4350 AACGGTCAGTGAAATGGCGTGGCGCAAGCTATTGCCTACTGTGCGTGAAGAAATTGTTTT 4409 | || || | || ||||| || || | || |||||||||||||| Sbjct 480 AGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACTGTGCGTGAAGA--------- 530 Query 4410 GCCTAATGGCAAGATTGTTTATTCTGAAGTATGGGTAACGTGGAACCCTGAAAGACGAGA 4469 | | || || || ||| | || ||||| |||||||| || || Sbjct 531 ------------------TAACTCAGAGGTTTGGATTACATGGAATCCTGAAAGGCGCGA 572 Query 4470 TAGCCCAACATCTACAAGGTTTAGACATGAAGAAATATTTGATGA--TGA-AGGTGTTTT 4526 ||| ||||| | | | ||| | ||||| ||||||||||||| ||| |||| || Sbjct 573 TAGTGCAACAAGCAGACGCTTTCGTCATGATCAAATATTTGATGACCTGACCGGTGAATT 632 Query 4527 AATCGGCATTGGCGCTGAGATGAACTATTCTGATAATCCGTGGTTCCCTCATGTTCTTGA 4586 ||| || |||||| |||||||| || ||||| ||||| ||||| || | ||| | || Sbjct 633 AATTGGTGTTGGCGTAGAGATGAATTACTCTGACAATCCTTGGTTTCCAGAGGTTTTAGA 692 Query 4587 CTTAGAGCGTAGACGAGATCAAGCAAATCTTGATGATGTAACTTACCGATGGATATGGG 4645 | |||||||| | |||| |||| ||||| || |||| ||| || || |||||||||| Sbjct 693 AATTGAGCGTAGGCAAGATAAAGCCAATCTAGACGATGAAACATATCGCTGGATATGGG 751 >seq75598 Length=201 Score = 114 bits (126), Expect = 4e-21 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 4904 ATGCCGTTTATGCGGATAGCGCTCGTCCTGAATCTATTAGTCATTTAAAGAAAAAAGGCT 4963 || || ||||||| |||| ||| | || || || || |||||||||| || |||| Sbjct 1 ATCCCATTTATGCAGATAACGCGAGGCCAGAGTCAATAAGTCATTTAAGTCGTAAGGGCT 60 Query 4964 TGCGTAGAATT-GCGCCTGTAGAAAAGGGTAAAGGTTCTGTTGAGGATGGTATTGAGTTC 5022 | ||||| | || ||| || || || |||||||| ||||||||||| || | || Sbjct 61 TAAAGAGAATCAGAGCGTGT-GAGAAAGGCAAAGGTTCGGTTGAGGATGGAATAGCATTT 119 Query 5023 ATCAAATCTTTTAAGAAAGTCTATATTCATTCACGATGCAAAGAAACTCTAAAAGAGTTC 5082 || | ||| |||||| |||||||||||| | || ||||||||||| |||| ||||| Sbjct 120 ATTAGATCATTTAAGCGTGTCTATATTCATACTCGCTGCAAAGAAACATTAAATGAGTTT 179 Query 5083 CGTGATTACTCATACAAAAAAG 5104 | |||||||| ||||||| Sbjct 180 AAAAACTACTCATATAAAAAAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148180619222160