Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_017984.1
Length=46387
Score E
Sequences producing significant alignments: (Bits) Value
seq23535 266 1e-66
seq75598 114 4e-21
>seq23535
Length=854
Score = 266 bits (294), Expect = 1e-66
Identities = 527/779 (68%), Gaps = 52/779 (7%)
Strand=Plus/Plus
Query 3887 TGATGTAACCACAAATGGTGAA---AGTTTGAATTCAAAACCTACCGTAATTGAATTAGT 3943
|||||| || || ||||||||| | | ||| || ||||| |||||||| | ||
Sbjct 5 TGATGTCACAACGAATGGTGAATCAATTAACAATGTTAAGCCTACTTTAATTGAACTGGT 64
Query 3944 TGCCCATAATGTCGAAA---------GTACAGATTAAGCTGCCACCAAAACTTGTACCTG 3994
|| | |||||| ||| || || ||| | || ||||| ||| | | ||
Sbjct 65 GGCACCCAATGTCAAAACAGCAGAAGGTGCAAATTGAACTACCACCTAAATTAATTCCGC 124
Query 3995 TCTTTTCTGC-TCAGGATGTGCGATACCGTCAAAGCTGGGGAGGAAGGGGTTCAGGTAAG 4053
| ||| | || || |||||| || | | ||||| || | || || | |||
Sbjct 125 TATTTAGCGAGTCCGG-TGTGCGCTATAGATCATCATGGGGTGGTCGTGGATCTGCCAAG 183
Query 4054 ACACGCTCGTTTGCAAAGATGACAGCCGTTAAAGGCTATATGTTTGCTGAAATGGGTGTA 4113
|| || || |||||| ||||| || | || || ||||| ||||| || || | |
Sbjct 184 ACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTATATCTTTGCAGA---GGCTCAA 240
Query 4114 A---GTGGAACTTTGCTTTGTGGTCGTGAGTTTATGAATACGCTTGCAGATTCTTCTATG 4170
| |||||| | || ||| ||||| || ||||| |||||| | || ||||| |||
Sbjct 241 ATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACACGCTTTCTGAATCTTCAATG 300
Query 4171 GAGGAAATTAAGCAAGCTATTC-GTGAAGAGCCATTTCTAAATAATTATTATGAGATGGG 4229
|| ||||| ||||| || || | || | | |||||||| |||||||||||||| || ||
Sbjct 301 GAAGAAATCAAGCAGGCGATACAGTCCACA-CCATTTCTGAATAATTATTATGATATTGG 359
Query 4230 TAAAAACTACATAAGAACCAAGAATAAGCGCGTAACTTACTCATTTTGTGGTTTGCGTCA 4289
| ||| || ||| | ||||| || || | || | ||| ||| |||| | || ||
Sbjct 360 TGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTATGGCTTTGCTGGTCTACGGCA 419
Query 4290 TAACTTAGATAGCATCAAGTCTAAAGCACGTATTTTGCTTAGTTGGGTGGATGAGGCTGA 4349
|||| || | ||||| || |||||||| |||||||||||| | ||||| |||||||||||
Sbjct 420 TAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTTTGCTGGGTTGATGAGGCTGA 479
Query 4350 AACGGTCAGTGAAATGGCGTGGCGCAAGCTATTGCCTACTGTGCGTGAAGAAATTGTTTT 4409
| || || | || ||||| || || | || ||||||||||||||
Sbjct 480 AGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACTGTGCGTGAAGA--------- 530
Query 4410 GCCTAATGGCAAGATTGTTTATTCTGAAGTATGGGTAACGTGGAACCCTGAAAGACGAGA 4469
| | || || || ||| | || ||||| |||||||| || ||
Sbjct 531 ------------------TAACTCAGAGGTTTGGATTACATGGAATCCTGAAAGGCGCGA 572
Query 4470 TAGCCCAACATCTACAAGGTTTAGACATGAAGAAATATTTGATGA--TGA-AGGTGTTTT 4526
||| ||||| | | | ||| | ||||| ||||||||||||| ||| |||| ||
Sbjct 573 TAGTGCAACAAGCAGACGCTTTCGTCATGATCAAATATTTGATGACCTGACCGGTGAATT 632
Query 4527 AATCGGCATTGGCGCTGAGATGAACTATTCTGATAATCCGTGGTTCCCTCATGTTCTTGA 4586
||| || |||||| |||||||| || ||||| ||||| ||||| || | ||| | ||
Sbjct 633 AATTGGTGTTGGCGTAGAGATGAATTACTCTGACAATCCTTGGTTTCCAGAGGTTTTAGA 692
Query 4587 CTTAGAGCGTAGACGAGATCAAGCAAATCTTGATGATGTAACTTACCGATGGATATGGG 4645
| |||||||| | |||| |||| ||||| || |||| ||| || || ||||||||||
Sbjct 693 AATTGAGCGTAGGCAAGATAAAGCCAATCTAGACGATGAAACATATCGCTGGATATGGG 751
>seq75598
Length=201
Score = 114 bits (126), Expect = 4e-21
Identities = 148/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 4904 ATGCCGTTTATGCGGATAGCGCTCGTCCTGAATCTATTAGTCATTTAAAGAAAAAAGGCT 4963
|| || ||||||| |||| ||| | || || || || |||||||||| || ||||
Sbjct 1 ATCCCATTTATGCAGATAACGCGAGGCCAGAGTCAATAAGTCATTTAAGTCGTAAGGGCT 60
Query 4964 TGCGTAGAATT-GCGCCTGTAGAAAAGGGTAAAGGTTCTGTTGAGGATGGTATTGAGTTC 5022
| ||||| | || ||| || || || |||||||| ||||||||||| || | ||
Sbjct 61 TAAAGAGAATCAGAGCGTGT-GAGAAAGGCAAAGGTTCGGTTGAGGATGGAATAGCATTT 119
Query 5023 ATCAAATCTTTTAAGAAAGTCTATATTCATTCACGATGCAAAGAAACTCTAAAAGAGTTC 5082
|| | ||| |||||| |||||||||||| | || ||||||||||| |||| |||||
Sbjct 120 ATTAGATCATTTAAGCGTGTCTATATTCATACTCGCTGCAAAGAAACATTAAATGAGTTT 179
Query 5083 CGTGATTACTCATACAAAAAAG 5104
| |||||||| |||||||
Sbjct 180 AAAAACTACTCATATAAAAAAG 201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148180619222160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |