Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq23535 116 1e-21 seq74011 87.8 6e-13 seq52475 80.6 8e-11 >seq23535 Length=854 Score = 116 bits (128), Expect = 1e-21 Identities = 272/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 536 GGTGGACGTGGCAGCGCCAAGACGCGCACATTTGCCCTGATGACTGCCGTAAAGGCGTAT 595 ||||| ||||| |||||||| || ||||||| || |||||||| | |||| ||| Sbjct 163 GGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTAT 222 Query 596 CAGTCGATGATGAACGGTGAAAGCGGCG---TGGTGCTATGCGCGCGTGAGTTCATGAAC 652 || || || | | ||| | | | || | || | |||||||| ||||||||| Sbjct 223 A--TCTTTGCAGAG-GCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAAC 279 Query 653 TCGCTGGAAGAGTCGAGCATGCAGGAAGTGAAGCAGGCGATCCTGTCTGTTCCCTGGCTG 712 |||| || || ||| | ||| | ||||||||||| | ||| || | ||| Sbjct 280 ACGCTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATACAGTCCACACCATTTCTG 339 Query 713 GCCGCCAACTTTGATATCGGCGAGAAGTATATCCGCACCATCGACAAGAGCGTTAACTAC 772 | | |||||| || || | ||||| || |||| |||| || || | || Sbjct 340 AATAATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTAT 399 Query 773 GTGTTCTGC-GGTCTGAGGCATAACCTCGACAGCATCAAGTCGAAAGCGCGCATTCTGCT 831 | | | ||| ||||| |||||||||| ||||||| || || |||||||| ||| |||| Sbjct 400 G-GCTTTGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCT 458 Query 832 GTGCTGGGTCGACGAGGCTGAATCAGTCAGCGAAATAGCCTGGCAGAAGCTGAGCCCAAC 891 |||||||| || ||||||||| || || | || |||| || | || || Sbjct 459 TTGCTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCAC 518 Query 892 AGTTCGTGAAGAAGGCTCAGAGATTTGGGTGACGTGGAACCCGGA 936 || |||||||| ||||||| ||||| | || ||||| || || Sbjct 519 TGTGCGTGAAGATAACTCAGAGGTTTGGATTACATGGAATCCTGA 563 >seq74011 Length=426741 Score = 87.8 bits (96), Expect = 6e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 29010 AGATGCGGAGGGTCAAACACCACAACCGGAAAAGAAGAATCAGCGAACGGCAGTGAACGA 29069 |||||||| || ||||||||||| | | ||| | | ||||||||| || || | ||| Sbjct 239202 AGATGCGGTGGATCAAACACCACCAACTTAAATGCACCATCAGCGAAGGGTAGGGTGCGA 239261 Query 29070 AAGTCGGCAATGAGGTCAGGACTGATAACC---AGGCTGCGACCGTCGCACAATATATGC 29126 ||||| |||| || || || | ||| | ||| || || |||| | ||| Sbjct 239262 AAGTCCATGATGACGTTGGG-CTCA--ACCTTTAACACGCGGCCATCACACAGAACGTGC 239318 Query 29127 TCCTCGTCGCGGATATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAACCAGAACATG 29186 | |||||||||||||||| |||| | |||||| | |||| ||| | ||||| ||||| Sbjct 239319 TGCTCGTCGCGGATATCGCCGAAGAGGGCGCGCTGGTCGCTCTTGTCGAACCAAAACATT 239378 Query 29187 CGCGAGCCGCAGCAC 29201 || ||| |||||| Sbjct 239379 CGGCTGCCACAGCAC 239393 >seq52475 Length=1114 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 48821 GAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGATTTC 48880 ||||||||||| ||| | |||||||||||||| || ||||| | ||||| ||| Sbjct 457 GAGTTCTGCGCGCTGATTGAGCATGAGCTTTATCATGCTGCACAAGAGCGCGATGCATTC 398 Query 48881 GGAGCGCCTAAGTTCAACAAAGAG-ACCGGGCATCCATTGCT-TACACTGCGCGGCCACG 48938 || || || ||||||| | ||||| || || | ||| | | | || || | || || | Sbjct 397 GGTGCACCAAAGTTCAGC-AAGAGCACAGGCCGGCCAGTATTCTGCA-TGAGGGGGCATG 340 Query 48939 ACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGC 48978 |||| ||||| ||| |||| || || |||||||| || || Sbjct 339 ACGTGGAAGAGTTCGTTGGCGTTGTTCGTCGATATGGGGC 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156905400983520