Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_018452.1
Length=61847
Score E
Sequences producing significant alignments: (Bits) Value
seq73604 192 2e-44
seq48801 190 8e-44
seq76879 145 3e-30
seq7145 107 8e-19
seq6427 107 8e-19
>seq73604
Length=2001
Score = 192 bits (212), Expect = 2e-44
Identities = 532/808 (66%), Gaps = 6/808 (1%)
Strand=Plus/Plus
Query 40060 TGGCTGGCGTGGGATAAGCC-GGTCTACGTTGCGCCGGGCCCGGTCGCGACCGATCGCCT 40118
||||| || ||||| |||| ||| | | |||||| || |||||||| ||||||||
Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034
Query 40119 CTACATCTTCGGCGACGGGCCGCCCAAGATGAAGGTCGGCGCGATGACCTATCCCCTCGC 40178
|||| | ||||| || || || ||| | ||||| | | ||||||||| |||||
Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094
Query 40179 CGTCCCGATGCCGAGCGCC-GCGCTGAACGCCGCGACGAGCGGCACGGGCACGGGCGACG 40237
|| || || || ||| || ||| |||||| || || |||| |||
Sbjct 1095 TGTGCC-ATTCCCAGCCAATGCACTGGTCGCCGCAGTCTCAGGAACAAGCACCTCGGACA 1153
Query 40238 TGTTCACGCGCGTCTACGTCTACACCTTCGTGACCGGCTTCGGCGAGGAGTCGGAACCCT 40297
| |||||||| ||| || || || | || || |||| |||||| ||||||||
Sbjct 1154 TTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAACCAA 1213
Query 40298 CGCCCATCTCCAATCAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTTTC 40357
||| | | | || | |||| |||| ||||| | ||||| || |||||
Sbjct 1214 GCCCCGCCAGCGTGCCCGTAGATTGGCGCCCCGGGCAGACGATGACCCTTTCGGGCTTCG 1273
Query 40358 AGGCGCCGCCGGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCC 40417
|||||||||||| ||| || |||| | ||||| ||||| || ||| || |
Sbjct 1274 CGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAATCGGGGA 1333
Query 40418 TGTCGGGCACGGATCTCTATTTCATCGCCGAACGTGACGCATCTGCGGCTAACTTCGTCG 40477
| ||||| |||||||||||||||| | || | ||||| ||||| ||||
Sbjct 1334 AGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAACTTTGTCG 1393
Query 40478 ATAATGT-GCCATTGACCCAGCAAAACGAGCCGCTTCCGTCGCTGGAGTGGAACGCGCCG 40536
|| | || | ||| || || || ||||| ||||| | | | || |||||
Sbjct 1394 ATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTACAATGCGCCT 1452
Query 40537 CCCGACGACCTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCGTTCCGCGGC 40596
||| ||||||| | || || ||| | || || |||||||| |||||||| ||| |||
Sbjct 1453 CCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTTCGCTGGC 1512
Query 40597 AAGGAGCTCTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCGAAAAGTACGTGCTG 40656
| ||| ||| | |||| || ||||| || ||||| || |||| |||| ||
Sbjct 1513 CGAAAAGTCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAGTTCGTGATG 1572
Query 40657 ACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACG 40716
|| | ||||| | | || | || |||||| |||| || | || || || |||
Sbjct 1573 ACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTCGTTATGACT 1632
Query 40717 GACGGCCAGCCCTACATCGTCTCCGGAGCGTCGCCGGACACCATGTCGCAGGAAAAGCTC 40776
||| ||||||| | || ||||| || |||| || | ||| ||| | ||| ||
Sbjct 1633 ACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAAGTGAAGATC 1692
Query 40777 GAGCTCAACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCC 40836
|| | || ||||| || || ||||| || || |||| |||||||| ||||| | |
Sbjct 1693 GAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATGGCGATTGTC 1752
Query 40837 TACCCGTCGCACGACGGCCTGGTTGTCG 40864
|| || || |||| || ||||||| ||
Sbjct 1753 TATCCTTCCAACGAGGGACTGGTTGCCG 1780
>seq48801
Length=253520
Score = 190 bits (210), Expect = 8e-44
Identities = 421/618 (68%), Gaps = 14/618 (2%)
Strand=Plus/Plus
Query 40251 CTACGTCTACACCTTCGTGACCGGCTTCGGCGAGGAGTCGGAACCCTCGCC--CATCTCC 40308
||||||||| |||| ||| || | ||||||||||||| ||| ||| ||||| | ||
Sbjct 138737 CTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTCGCCTGCTTCGAA 138796
Query 40309 AATCAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTT--TCAGGCGCCGC 40366
|||| | ||||| || |||| ||| |||||| || || ||||| ||| || |||
Sbjct 138797 CATCA--TTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGC-CCGT 138853
Query 40367 CGGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCCTGTCGGGCA 40426
| ||||| || | || |||||||||||||| |||||| || || | | || |
Sbjct 138854 C-GCCGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGA 138912
Query 40427 CGGATCTCTATTTCATCGCCGAACGTGACGCATCTGCGGCTAACTTCGTCGATAATGT-G 40485
| || | ||||||||||||||||| |||| | || | |||||| || || ||| |
Sbjct 138913 CCTATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCG 138972
Query 40486 CCATTGACCCAGCAAAACGAGCCGCTTCCGTCGCTGGAGTGGAACGCGCCGCCCGACGAC 40545
| ||||| || || || |||| || ||| | ||| ||| ||| || | |
Sbjct 138973 CGGTTGACGCATTTCAA-GAAGCGCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCA 139031
Query 40546 CTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCGTTCCGCGGCAAGGAGC-T 40604
|| |||||||| | | ||||||||||||||||||| || ||| ||| | | ||| |
Sbjct 139032 CTCACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCATTCGTCGG-ACGCAGCGT 139090
Query 40605 CTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCGAAAAGTACGTGCTGACGATGGA 40664
|| |||||||||| |||||||| |||| ||||| ||||| ||| | ||| ||
Sbjct 139091 CTACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGA 139150
Query 40665 TTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCA 40724
| || | || |||||||| | ||| | | | || ||| |||| | | |
Sbjct 139151 CAGCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAA 139210
Query 40725 GCCCTACATCGTCTCCGG-AGCGTCGCCGGACACCATGTCGCAGGAAAAGCTCGAGCTCA 40783
|||||| || | |||| ||| ||||| | ||| | ||||||||||| |
Sbjct 139211 TCCCTACGTCATGACCGGCAGC-CATCCGGATTCGATGCAGTCTCAAAAGCTCGAGTCGA 139269
Query 40784 ACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCCTACCCGT 40843
| | || |||||||||||||| ||| ||| || ||||| | ||| ||| ||| |||
Sbjct 139270 ATTTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGA 139329
Query 40844 CGCACGACGGCCTGGTTG 40861
|||| || || ||||
Sbjct 139330 GCAACGATGGTCTTGTTG 139347
>seq76879
Length=36809
Score = 145 bits (160), Expect = 3e-30
Identities = 315/465 (68%), Gaps = 10/465 (2%)
Strand=Plus/Plus
Query 26369 CGATGAGGACTACTATGACAATATCCAGTGGACGC-AGGACGAGATCGAGGAGCTGAAGG 26427
||| || |||| ||| |||||||| |||||| ||| | || || | || | ||||||
Sbjct 26265 CGAAGAAGACTTCTACGACAATATTCAGTGG-CGCGAAGAGGACGCCCAGACGTTGAAGG 26323
Query 26428 AGCGCGGACAGGCGCCGACCGTCTACAACGTCATCGCGCAGAGCGTGAACTGGATCATCG 26487
| ||||| |||| |||| |||||||||||||| | | ||| | ||| | | |
Sbjct 26324 ATCGCGGCCAGGTGCCGCTGGTCTACAACGTCATTTCCGCGTCCGTCGATTGGGTAACAG 26383
Query 26488 GCAGCGAGAAGCGCGGCCGATCCGACTTCAAGGTGCTGCCGCGCCGGAAGGATGGCGGCA 26547
| | || ||| || |||| | |||| | ||||| || || ||||| | | |||
Sbjct 26384 GTACGGAAAAGAAGACACGCACCGATTACAAGATCCTGCCTCGACGCAAGGAAGACAGCA 26443
Query 26548 AGGCCGCCGAGCGCAAGACCGCCCTGCTCAAGTACCTGTCGGACGTGAACCACCTGCCCT 26607
|| | || |||||||||||| | || | ||||| |||||||||||||||| || |
Sbjct 26444 AGCCGGCGGAGCGCAAGACCTCGCTCATGAAGTATCTGTCGGACGTGAACCGGACACCAT 26503
Query 26608 TCGAGCGCTCGATGGCGTTCGAGGATGCCGTGAAGGCCGGCATCGGCTGGCTGGA--ATC 26665
|| | || ||||||||||| || ||||||| ||| || |||||||| || ||
Sbjct 26504 TCCATACATCTCGCGCGTTCGAGGACGCAGTGAAGGTCGGGATTGGCTGGCTTGAGGATG 26563
Query 26666 GCAGGTGCAGGACGAGAACGACGGCGAGCCGCTGTATGCCGGCGCCGAAAGCTGGCGCAA 26725
|| | | |||| | ||| ||| | || | | || |||||||| ||
Sbjct 26564 GC--GCAAACCACGACAGCGAGCTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAA 26621
Query 26726 CATCCTCTGGGACA--GCACCTACCGGCGCCTCGACATGGACGACTGCCGGTACATCTTC 26783
|||||| ||||||| ||| | |||| ||||| || ||| | || | ||||||
Sbjct 26622 CATCCTATGGGACAGCGCAGCAACCG--AACTCGATTTGAGCGATGGACGCTTTATCTTC 26679
Query 26784 CGCGTGAAGTGGGTCGACCTCGACGTTGCGGTCGCCATCTTCCCG 26828
|| |||||||| ||||||||| |||| || || ||||||
Sbjct 26680 CGGTCAAAGTGGGTTGACCTCGACATTGCACAAGCGATGTTCCCG 26724
>seq7145
Length=2121
Score = 107 bits (118), Expect = 8e-19
Identities = 224/326 (69%), Gaps = 17/326 (5%)
Strand=Plus/Plus
Query 56626 CCGTGCTGCTGCATGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGTACGGCGGCGT 56685
|||||||||| || || ||||||||| |||| ||||| |||||||| ||| |||| |
Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509
Query 56686 GGAC--CGA-CCTGATGGGCCGCCTCGACTCGCTGCACCGTCAGGCGCGGCAGTCGAGCG 56742
||| || ||||| | ||||| | | |||| ||| || | || ||| | |
Sbjct 510 GGAATACGCTCCTGAAG---CGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 566
Query 56743 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGGGCACGTGTTGCGAGCGCGCA---ACGCG 56799
| | || ||| ||||||||||||||| || | || |||||| | || | ||
Sbjct 567 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 626
Query 56800 CCGGCGCCATGCCTGAGACGCTGACGGCCGAGGAGTTCGGCGCCTACACGATCGAGAACT 56859
||||| |||| | || ||||| ||||| || |||||||| || |||| || | |
Sbjct 627 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 686
Query 56860 ACGA-GCAGGCGCC---CGCCGCGTTCCGCAAGTGGGTCGACGACGTGATCGGCACGGTG 56915
|||| ||| ||||| ||| ||| ||| ||||| || ||| | ||||| ||
Sbjct 687 ACGACGCA-GCGCCGGGCGCGGCGAAGCGC---TGGGTTGATGACCTCGTCGGCCATGTA 742
Query 56916 AAGGCGTGGCTGCTGCGCCGCTTCGG 56941
||||||||| |||| || | |||||
Sbjct 743 AAGGCGTGGGTGCTTCGAAGGTTCGG 768
>seq6427
Length=47605
Score = 107 bits (118), Expect = 8e-19
Identities = 224/326 (69%), Gaps = 17/326 (5%)
Strand=Plus/Plus
Query 56626 CCGTGCTGCTGCATGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGTACGGCGGCGT 56685
|||||||||| || || ||||||||| |||| ||||| |||||||| ||| |||| |
Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995
Query 56686 GGAC--CGA-CCTGATGGGCCGCCTCGACTCGCTGCACCGTCAGGCGCGGCAGTCGAGCG 56742
||| || ||||| | ||||| | | |||| ||| || | || ||| | |
Sbjct 9996 GGAATACGCTCCTGAAG---CGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 10052
Query 56743 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGGGCACGTGTTGCGAGCGCGCA---ACGCG 56799
| | || ||| ||||||||||||||| || | || |||||| | || | ||
Sbjct 10053 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 10112
Query 56800 CCGGCGCCATGCCTGAGACGCTGACGGCCGAGGAGTTCGGCGCCTACACGATCGAGAACT 56859
||||| |||| | || ||||| ||||| || |||||||| || |||| || | |
Sbjct 10113 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 10172
Query 56860 ACGA-GCAGGCGCC---CGCCGCGTTCCGCAAGTGGGTCGACGACGTGATCGGCACGGTG 56915
|||| ||| ||||| ||| ||| ||| ||||| || ||| | ||||| ||
Sbjct 10173 ACGACGCA-GCGCCGGGCGCGGCGAAGCGC---TGGGTTGATGACCTCGTCGGCCATGTA 10228
Query 56916 AAGGCGTGGCTGCTGCGCCGCTTCGG 56941
||||||||| |||| || | |||||
Sbjct 10229 AAGGCGTGGGTGCTTCGAAGGTTCGG 10254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 197607195268560
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