Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq73604 192 2e-44 seq48801 190 8e-44 seq76879 145 3e-30 seq7145 107 8e-19 seq6427 107 8e-19 >seq73604 Length=2001 Score = 192 bits (212), Expect = 2e-44 Identities = 532/808 (66%), Gaps = 6/808 (1%) Strand=Plus/Plus Query 40060 TGGCTGGCGTGGGATAAGCC-GGTCTACGTTGCGCCGGGCCCGGTCGCGACCGATCGCCT 40118 ||||| || ||||| |||| ||| | | |||||| || |||||||| |||||||| Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034 Query 40119 CTACATCTTCGGCGACGGGCCGCCCAAGATGAAGGTCGGCGCGATGACCTATCCCCTCGC 40178 |||| | ||||| || || || ||| | ||||| | | ||||||||| ||||| Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094 Query 40179 CGTCCCGATGCCGAGCGCC-GCGCTGAACGCCGCGACGAGCGGCACGGGCACGGGCGACG 40237 || || || || ||| || ||| |||||| || || |||| ||| Sbjct 1095 TGTGCC-ATTCCCAGCCAATGCACTGGTCGCCGCAGTCTCAGGAACAAGCACCTCGGACA 1153 Query 40238 TGTTCACGCGCGTCTACGTCTACACCTTCGTGACCGGCTTCGGCGAGGAGTCGGAACCCT 40297 | |||||||| ||| || || || | || || |||| |||||| |||||||| Sbjct 1154 TTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAACCAA 1213 Query 40298 CGCCCATCTCCAATCAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTTTC 40357 ||| | | | || | |||| |||| ||||| | ||||| || ||||| Sbjct 1214 GCCCCGCCAGCGTGCCCGTAGATTGGCGCCCCGGGCAGACGATGACCCTTTCGGGCTTCG 1273 Query 40358 AGGCGCCGCCGGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCC 40417 |||||||||||| ||| || |||| | ||||| ||||| || ||| || | Sbjct 1274 CGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAATCGGGGA 1333 Query 40418 TGTCGGGCACGGATCTCTATTTCATCGCCGAACGTGACGCATCTGCGGCTAACTTCGTCG 40477 | ||||| |||||||||||||||| | || | ||||| ||||| |||| Sbjct 1334 AGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAACTTTGTCG 1393 Query 40478 ATAATGT-GCCATTGACCCAGCAAAACGAGCCGCTTCCGTCGCTGGAGTGGAACGCGCCG 40536 || | || | ||| || || || ||||| ||||| | | | || ||||| Sbjct 1394 ATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTACAATGCGCCT 1452 Query 40537 CCCGACGACCTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCGTTCCGCGGC 40596 ||| ||||||| | || || ||| | || || |||||||| |||||||| ||| ||| Sbjct 1453 CCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTTCGCTGGC 1512 Query 40597 AAGGAGCTCTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCGAAAAGTACGTGCTG 40656 | ||| ||| | |||| || ||||| || ||||| || |||| |||| || Sbjct 1513 CGAAAAGTCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAGTTCGTGATG 1572 Query 40657 ACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACG 40716 || | ||||| | | || | || |||||| |||| || | || || || ||| Sbjct 1573 ACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTCGTTATGACT 1632 Query 40717 GACGGCCAGCCCTACATCGTCTCCGGAGCGTCGCCGGACACCATGTCGCAGGAAAAGCTC 40776 ||| ||||||| | || ||||| || |||| || | ||| ||| | ||| || Sbjct 1633 ACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAAGTGAAGATC 1692 Query 40777 GAGCTCAACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCC 40836 || | || ||||| || || ||||| || || |||| |||||||| ||||| | | Sbjct 1693 GAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATGGCGATTGTC 1752 Query 40837 TACCCGTCGCACGACGGCCTGGTTGTCG 40864 || || || |||| || ||||||| || Sbjct 1753 TATCCTTCCAACGAGGGACTGGTTGCCG 1780 >seq48801 Length=253520 Score = 190 bits (210), Expect = 8e-44 Identities = 421/618 (68%), Gaps = 14/618 (2%) Strand=Plus/Plus Query 40251 CTACGTCTACACCTTCGTGACCGGCTTCGGCGAGGAGTCGGAACCCTCGCC--CATCTCC 40308 ||||||||| |||| ||| || | ||||||||||||| ||| ||| ||||| | || Sbjct 138737 CTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTCGCCTGCTTCGAA 138796 Query 40309 AATCAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTT--TCAGGCGCCGC 40366 |||| | ||||| || |||| ||| |||||| || || ||||| ||| || ||| Sbjct 138797 CATCA--TTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGC-CCGT 138853 Query 40367 CGGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCCTGTCGGGCA 40426 | ||||| || | || |||||||||||||| |||||| || || | | || | Sbjct 138854 C-GCCGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGA 138912 Query 40427 CGGATCTCTATTTCATCGCCGAACGTGACGCATCTGCGGCTAACTTCGTCGATAATGT-G 40485 | || | ||||||||||||||||| |||| | || | |||||| || || ||| | Sbjct 138913 CCTATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCG 138972 Query 40486 CCATTGACCCAGCAAAACGAGCCGCTTCCGTCGCTGGAGTGGAACGCGCCGCCCGACGAC 40545 | ||||| || || || |||| || ||| | ||| ||| ||| || | | Sbjct 138973 CGGTTGACGCATTTCAA-GAAGCGCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCA 139031 Query 40546 CTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCGTTCCGCGGCAAGGAGC-T 40604 || |||||||| | | ||||||||||||||||||| || ||| ||| | | ||| | Sbjct 139032 CTCACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCATTCGTCGG-ACGCAGCGT 139090 Query 40605 CTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCGAAAAGTACGTGCTGACGATGGA 40664 || |||||||||| |||||||| |||| ||||| ||||| ||| | ||| || Sbjct 139091 CTACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGA 139150 Query 40665 TTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCA 40724 | || | || |||||||| | ||| | | | || ||| |||| | | | Sbjct 139151 CAGCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAA 139210 Query 40725 GCCCTACATCGTCTCCGG-AGCGTCGCCGGACACCATGTCGCAGGAAAAGCTCGAGCTCA 40783 |||||| || | |||| ||| ||||| | ||| | ||||||||||| | Sbjct 139211 TCCCTACGTCATGACCGGCAGC-CATCCGGATTCGATGCAGTCTCAAAAGCTCGAGTCGA 139269 Query 40784 ACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCCTACCCGT 40843 | | || |||||||||||||| ||| ||| || ||||| | ||| ||| ||| ||| Sbjct 139270 ATTTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGA 139329 Query 40844 CGCACGACGGCCTGGTTG 40861 |||| || || |||| Sbjct 139330 GCAACGATGGTCTTGTTG 139347 >seq76879 Length=36809 Score = 145 bits (160), Expect = 3e-30 Identities = 315/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 26369 CGATGAGGACTACTATGACAATATCCAGTGGACGC-AGGACGAGATCGAGGAGCTGAAGG 26427 ||| || |||| ||| |||||||| |||||| ||| | || || | || | |||||| Sbjct 26265 CGAAGAAGACTTCTACGACAATATTCAGTGG-CGCGAAGAGGACGCCCAGACGTTGAAGG 26323 Query 26428 AGCGCGGACAGGCGCCGACCGTCTACAACGTCATCGCGCAGAGCGTGAACTGGATCATCG 26487 | ||||| |||| |||| |||||||||||||| | | ||| | ||| | | | Sbjct 26324 ATCGCGGCCAGGTGCCGCTGGTCTACAACGTCATTTCCGCGTCCGTCGATTGGGTAACAG 26383 Query 26488 GCAGCGAGAAGCGCGGCCGATCCGACTTCAAGGTGCTGCCGCGCCGGAAGGATGGCGGCA 26547 | | || ||| || |||| | |||| | ||||| || || ||||| | | ||| Sbjct 26384 GTACGGAAAAGAAGACACGCACCGATTACAAGATCCTGCCTCGACGCAAGGAAGACAGCA 26443 Query 26548 AGGCCGCCGAGCGCAAGACCGCCCTGCTCAAGTACCTGTCGGACGTGAACCACCTGCCCT 26607 || | || |||||||||||| | || | ||||| |||||||||||||||| || | Sbjct 26444 AGCCGGCGGAGCGCAAGACCTCGCTCATGAAGTATCTGTCGGACGTGAACCGGACACCAT 26503 Query 26608 TCGAGCGCTCGATGGCGTTCGAGGATGCCGTGAAGGCCGGCATCGGCTGGCTGGA--ATC 26665 || | || ||||||||||| || ||||||| ||| || |||||||| || || Sbjct 26504 TCCATACATCTCGCGCGTTCGAGGACGCAGTGAAGGTCGGGATTGGCTGGCTTGAGGATG 26563 Query 26666 GCAGGTGCAGGACGAGAACGACGGCGAGCCGCTGTATGCCGGCGCCGAAAGCTGGCGCAA 26725 || | | |||| | ||| ||| | || | | || |||||||| || Sbjct 26564 GC--GCAAACCACGACAGCGAGCTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAA 26621 Query 26726 CATCCTCTGGGACA--GCACCTACCGGCGCCTCGACATGGACGACTGCCGGTACATCTTC 26783 |||||| ||||||| ||| | |||| ||||| || ||| | || | |||||| Sbjct 26622 CATCCTATGGGACAGCGCAGCAACCG--AACTCGATTTGAGCGATGGACGCTTTATCTTC 26679 Query 26784 CGCGTGAAGTGGGTCGACCTCGACGTTGCGGTCGCCATCTTCCCG 26828 || |||||||| ||||||||| |||| || || |||||| Sbjct 26680 CGGTCAAAGTGGGTTGACCTCGACATTGCACAAGCGATGTTCCCG 26724 >seq7145 Length=2121 Score = 107 bits (118), Expect = 8e-19 Identities = 224/326 (69%), Gaps = 17/326 (5%) Strand=Plus/Plus Query 56626 CCGTGCTGCTGCATGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGTACGGCGGCGT 56685 |||||||||| || || ||||||||| |||| ||||| |||||||| ||| |||| | Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509 Query 56686 GGAC--CGA-CCTGATGGGCCGCCTCGACTCGCTGCACCGTCAGGCGCGGCAGTCGAGCG 56742 ||| || ||||| | ||||| | | |||| ||| || | || ||| | | Sbjct 510 GGAATACGCTCCTGAAG---CGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 566 Query 56743 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGGGCACGTGTTGCGAGCGCGCA---ACGCG 56799 | | || ||| ||||||||||||||| || | || |||||| | || | || Sbjct 567 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 626 Query 56800 CCGGCGCCATGCCTGAGACGCTGACGGCCGAGGAGTTCGGCGCCTACACGATCGAGAACT 56859 ||||| |||| | || ||||| ||||| || |||||||| || |||| || | | Sbjct 627 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 686 Query 56860 ACGA-GCAGGCGCC---CGCCGCGTTCCGCAAGTGGGTCGACGACGTGATCGGCACGGTG 56915 |||| ||| ||||| ||| ||| ||| ||||| || ||| | ||||| || Sbjct 687 ACGACGCA-GCGCCGGGCGCGGCGAAGCGC---TGGGTTGATGACCTCGTCGGCCATGTA 742 Query 56916 AAGGCGTGGCTGCTGCGCCGCTTCGG 56941 ||||||||| |||| || | ||||| Sbjct 743 AAGGCGTGGGTGCTTCGAAGGTTCGG 768 >seq6427 Length=47605 Score = 107 bits (118), Expect = 8e-19 Identities = 224/326 (69%), Gaps = 17/326 (5%) Strand=Plus/Plus Query 56626 CCGTGCTGCTGCATGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGTACGGCGGCGT 56685 |||||||||| || || ||||||||| |||| ||||| |||||||| ||| |||| | Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995 Query 56686 GGAC--CGA-CCTGATGGGCCGCCTCGACTCGCTGCACCGTCAGGCGCGGCAGTCGAGCG 56742 ||| || ||||| | ||||| | | |||| ||| || | || ||| | | Sbjct 9996 GGAATACGCTCCTGAAG---CGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTG 10052 Query 56743 GCCGGGCGCGGGAATTCTTCGACGCGGCGCGGGCACGTGTTGCGAGCGCGCA---ACGCG 56799 | | || ||| ||||||||||||||| || | || |||||| | || | || Sbjct 10053 GAGGCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAA 10112 Query 56800 CCGGCGCCATGCCTGAGACGCTGACGGCCGAGGAGTTCGGCGCCTACACGATCGAGAACT 56859 ||||| |||| | || ||||| ||||| || |||||||| || |||| || | | Sbjct 10113 CCGGCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAAT 10172 Query 56860 ACGA-GCAGGCGCC---CGCCGCGTTCCGCAAGTGGGTCGACGACGTGATCGGCACGGTG 56915 |||| ||| ||||| ||| ||| ||| ||||| || ||| | ||||| || Sbjct 10173 ACGACGCA-GCGCCGGGCGCGGCGAAGCGC---TGGGTTGATGACCTCGTCGGCCATGTA 10228 Query 56916 AAGGCGTGGCTGCTGCGCCGCTTCGG 56941 ||||||||| |||| || | ||||| Sbjct 10229 AAGGCGTGGGTGCTTCGAAGGTTCGG 10254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197607195268560