Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_019713.1 Length=78751 Score E Sequences producing significant alignments: (Bits) Value seq66703 196 2e-45 >seq66703 Length=1304 Score = 196 bits (216), Expect = 2e-45 Identities = 455/677 (67%), Gaps = 22/677 (3%) Strand=Plus/Plus Query 52897 CTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTACAT 52956 ||||||||| || || ||||| | |||||||||||| | || ||| | | ||||| | Sbjct 257 CTTAGTAACTACTCGAAAGAGTTATTGGAAAGCAGCTATCGCAGAATTATTAGGGTATCT 316 Query 52957 TCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCACTTGGGACGCTAA 53016 ||||| || || || | | || ||| | ||| | || ||| ||||||| Sbjct 317 ACGTGGTTATGATAGCGCAGCTCAGTTTCGAGCTATTGGATGTAATACATGGAACGCTAA 376 Query 53017 CGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATGGG 53076 ||||| | |||||||||||| | ||| || || || || || || | ||||| Sbjct 377 TGCCAATGAAAATGAAGCTTGGTTAGCTAATCCTTATCGTAAAGGTAAGGATGATATGGG 436 Query 53077 GCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCG-GTACTGTGGACC 53135 || ||||| ||||| ||||| || ||| ||| | | || | | | | || ||| Sbjct 437 CCGAGTTTATGGTGTACAGGGGCGCAGGTGGCGTAATTCAGTAGGAGAGGAGTTTG-ACC 495 Query 53136 AGCTCAAGAAGATTGTGGATAATCTTACTAA-CGGTATCGACGACCGTGGGGAGATCCTG 53194 |||| | ||||| ||||| ||| | || |||||| || ||||| || || || || Sbjct 496 AGCTTCATAAGATCTATGATAA-CTTGCGAAACGGTATTGATGACCGAGGTGAAATTCTA 554 Query 53195 AACTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGCATGTACAGCCAC 53254 | ||||||||| || || ||||| || |||||||| |||| || || ||| | | || Sbjct 555 ACCTTCTACAATCCAGGTGAGTTTCATATGGGATGTTTACGTCCTTGTATGCATACTCAT 614 Query 53255 CACTTCTCACTGCTAGGAGACACCCTGTATCTCAACAGCA-CACAACGCTCTTGTGATGT 53313 || || || |||| | || || ||| | | | || ||||||| || |||||||| Sbjct 615 ACATTTTCGTTGTTAGGTGGCAAGCTTTATTTGA-CTTCATCACAACGTTCATGTGATGT 673 Query 53314 ACCTTTGGGTCTGAACTTCAACATGGTTCAGGTGTACGTGTTCCTAGCGATCATGGCTCA 53373 ||| || |||| || || || | |||| |||| || ||||| |||||||||| Sbjct 674 ACCATTAGGTCAAAATTTTAATCAGATTCAAGTGTTTACCTTACTAGCTCTCATGGCTCA 733 Query 53374 AATCACCGGGCACAAGATGGGCACCGCGCACCACAAGATCGTGAACGCTCATATCTACGA 53433 ||| || || ||| || || | || | || |||||||| || || ||||| || || Sbjct 734 AATTACGGGCCACGAGGCCGGAAAAGCTTATCATAAGATCGTAAATGCACATATTTATGA 793 Query 53434 AGACCAGATAGATCTCATGCGCGACGTACA--GTTAACCCGA--GAGCCGCTAGAC-CCA 53488 ||| || || | | ||||| ||||| | | |||| | |||| ||| || || Sbjct 794 AGATCAATTACAATTAATGCGTGACGTGNAACGCGAACCGTATCCAGCCCCTAAACTTCA 853 Query 53489 CCCGTGTTGTGGATCAACCCGGACATCAAGACACTAGAAGACTTGGAGACTTGGGTAACA 53548 | || ||||| || || ||| | || ||||| | ||||| ||||||||| Sbjct 854 C-----------ATTAACCCTGAAATTAAGTCTCTCGAAGATATTGAGACATGGGTAACA 902 Query 53549 CTGGACGACTTTGATGT 53565 ||||||| ||||| || Sbjct 903 TTGGACGATTTTGAAGT 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251641045538240