Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq73604 212 3e-50 seq76879 159 1e-34 seq48801 122 4e-23 seq7145 104 9e-18 seq6427 104 9e-18 >seq73604 Length=2001 Score = 212 bits (234), Expect = 3e-50 Identities = 652/994 (66%), Gaps = 31/994 (3%) Strand=Plus/Plus Query 40863 GGGTTCTCGGGAGAAATCCCGCGCCTTGTGCCGCGCCTGCTGCCCGACACCGCCGCGCAG 40922 || ||||| || ||| |||||| || | ||||| || |||| || ||||| | ||| Sbjct 802 GGTTTCTCTGGCGAACAGCCGCGCATTATTCCGCGTATGTTGCCAGAAACCGCGTCACAG 861 Query 40923 AACGCGACGAACGCGCGGCTCGAGTCGGGCGGCCTGTCCCCATACCGCAAGCCGAAGTTC 40982 || | ||| |||||||||| ||||| ||| | || ||| ||| || | Sbjct 862 GCGGCAATCAACACGCGGCTCGACGACGGCGGGCTGACGCCTATGCGCCGACCG--GTGC 919 Query 40983 ATCACGCGGATCGACACGATCCCCGCCGGCCAGATCG---AGACGATCTTTCGGAACGGC 41039 | | ||||||| | ||| || ||| || | ||||| | | | || || Sbjct 920 A-------GGTCGACACAGTACCCA---GCAAGACCGCCAAAACGATATATAGAAAAAGC 969 Query 41040 GAGACGTGGATGGCGTGGGATAAGCC-GGTCTACGCGGCGCCGGGCCCGGTCGCGGCCGA 41098 | | ||| | || ||||| |||| ||| | || ||||| || |||||||| | || Sbjct 970 GGCGCTTGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGA 1028 Query 41099 TCGCCTCTACGTGATGGGCGACGGCGCTCCGAAGATGATCGTCGGCGGCACGACGTACCC 41158 |||||||||| | | ||||| |||| |||||| |||| ||||| |||||| || || Sbjct 1029 TCGCCTCTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCC 1088 Query 41159 GCTCGCGGTGCCGATGCCGAGC----GCCGCGCTCACCGCGGCGACGAGCGGAACGGGCA 41214 |||||| ||||| || || ||| || | || |||| | | ||||| ||| Sbjct 1089 GCTCGCTGTGCC-ATTCCCAGCCAATGCACTGGTCGCCGCAGTCTCA---GGAACAAGCA 1144 Query 41215 CGGGCGACGTGTTCTCGCGCGTCTACGTCTACACGTTCGTAACCGGGTTCGGCGAGGAAT 41274 | ||| | || ||||| ||| || || || | || || ||||| |||||||| Sbjct 1145 CCTCGGACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAAT 1204 Query 41275 CCGAGCCTTCCGCCGT-ATCGAACGAAGTGAACTGGCAGGCGGGGCAGACCGTAACCCTC 41333 | || || | ||| | || | || | |||| | |||||||| | ||||| Sbjct 1205 CGGAACCAAGCCCCGCCAGCGTGCCC-GTAGATTGGCGCCCCGGGCAGACGATGACCCTT 1263 Query 41334 TCTGGATTTCAGGCGGCGCCGGCTGGCCGCAATATCACGAAGCAGCGCATCTACCGGTCG 41393 || || || |||| ||||||||||| || |||| | ||||| ||||| || Sbjct 1264 TCGGGCTTCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCC 1323 Query 41394 CAAACGAGCCTTTCGGGCACCGACCTTTACTTCATCGCCGAACGCGACGCATCTGCTGCT 41453 ||| || | |||||| | | || ||||||||||| | || | || || Sbjct 1324 CAATCGGGGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCA 1383 Query 41454 AACTTCGTCGATAATGT-GCCTTTGACGGATCAAAACGAGCCGCTTCCGTCGCTCGAATG 41512 ||||| |||||| | || | |||| || || || ||||| ||||| || | | Sbjct 1384 AACTTTGTCGATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTA 1442 Query 41513 GAATGCGCCGCCCGACGACCTGACGGGCCTTATCTCGCTGCCGAACGGCATGATGGCGGC 41572 |||||||| ||| ||||||| | ||| || ||| | || || |||||||| ||||| || Sbjct 1443 CAATGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGC 1502 Query 41573 GTTTCGC-GGCAAGGAGCTTTGGTTCTGCGAGCCGTGGCGCCCGCATGCGTACCCGCAGA 41631 ||||| ||| | | | |||| | |||| || |||||||| | ||| ||| Sbjct 1503 -CTTCGCTGGCCGAAAAGTCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGA 1561 Query 41632 AGTACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCG 41691 ||| |||| |||| | ||||| | | || | || |||||| |||| || | || | Sbjct 1562 AGTTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGG 1621 Query 41692 TGGTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACGCCATGTCGC 41751 | || ||| ||| ||||||| | || |||||| || |||| || | ||| || Sbjct 1622 TCGTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGC 1681 Query 41752 AGGAAAAGCTCGAACTCAACCTGCCGTGCATCAACGCGCGCGGGCTTGTCGACCTTGGCT 41811 | | ||| |||||| || ||||| || || ||||| || || | || ||||| || Sbjct 1682 AAGTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAA 1741 Query 41812 ATGCGATCGCCTATCCATCGCACGATGGGCTCGT 41845 ||||| | |||||| || |||| || || || Sbjct 1742 TGGCGATTGTCTATCCTTCCAACGAGGGACTGGT 1775 >seq76879 Length=36809 Score = 159 bits (176), Expect = 1e-34 Identities = 329/481 (68%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 26470 CGACAGCAAGAGAATCGGGCCGAGATGGCAGTGGATGAGGACTACTATGACAATATCCAG 26529 ||||| || || ||||| || | ||| || || || |||| ||| |||||||| ||| Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292 Query 26530 TGGACGCAGGACGAGATCGACGAG---TTGAAGGAGCGCGGACAGGCGCCGACCGTCTAC 26586 ||| ||| || ||| || | || |||||||| ||||| |||| |||| |||||| Sbjct 26293 TGG-CGC--GAAGAGGACGCCCAGACGTTGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349 Query 26587 AACGTCATCGCGCAGAGCGTGAACTGGATCATCGGCAGCGAGAAGCGCGGCCGTTCCGAC 26646 |||||||| | | ||| | ||| | | || | || ||| || |||| Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409 Query 26647 TTCAAGGTGCTGCCGCGTCGCAAGGAAGGCGGCAAGGCAGCCGAGCGCAAGACCGCCCTC 26706 | |||| | ||||| || |||||||||| | ||||| | || |||||||||||| | ||| Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469 Query 26707 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTCGAGGAG 26766 | ||||| ||||| |||||||||| || || ||| | || ||||||||||| Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529 Query 26767 GCGACGAAAGCTGGTATCGGCTGGCTGGAATCGCAGGTGCAGGACGAGAACGACGGCGAG 26826 || ||| | || || |||||||| || | || ||| | ||||| ||||| Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGA--GGATGGCGCA----AACCACGACAGCGAG 26583 Query 26827 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATACTCTGGGACAGCAC-GTA 26879 | |||| ||| || | ||||||||||| ||||| || ||||||||| | | | Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643 Query 26880 CCGCCGGCTCGACATGGACGACTGCCGGTACATCTTCCGCGTGAAGTGGGTCGACCTCGA 26939 | | ||||| || ||| | || | |||||||| |||||||| |||||||| Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702 Query 26940 C 26940 | Sbjct 26703 C 26703 >seq48801 Length=253520 Score = 122 bits (134), Expect = 4e-23 Identities = 400/613 (65%), Gaps = 8/613 (1%) Strand=Plus/Plus Query 41237 CTACGTCTACACGTTCGTAACCGGGTTCGGCGAGGAATCCGAGCCTTCCGCCGTATCGAA 41296 ||||||||| || | ||| || | ||||||||||| | | || || | | ||||| Sbjct 138737 CTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTCGCCTGCTTCGAA 138796 Query 41297 CGAAGTGAACTGGCAGGCGGGGCAGACCGTAACCCTCTCTGGATT--TCAGGCGGCGCCG 41354 | | ||||| || | |||||| ||| || || || || || ||| || || || Sbjct 138797 CATCATTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGCC-CGTCG 138855 Query 41355 GCTGGCCGCAATATCACGAAGCAGCGCATCTACCGGTCGCAAACGAGCCTTTCGGGCACC 41414 | || || | || |||||||||||||| ||||| || || | | || ||| Sbjct 138856 CC-GGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGACC 138914 Query 41415 GACCTTTACTTCATCGCCGAACGCGACGCATCTGCTGCTAACTTCGTCGATAATGT-GCC 41473 | | || ||||||||||||||| |||| | |||| |||||| || || ||| || Sbjct 138915 TATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCGCG 138974 Query 41474 TTTGACGGATCAAAACGAGCCGCTTCCGTCGCTCGAATGGAATGCGCCGCCCGACGACCT 41533 |||||| || || || |||| || ||| || ||| | | ||| || | | || Sbjct 138975 GTTGACGCATTTCAA-GAAGCGCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCACT 139033 Query 41534 GACGGGCCTTATCTCGCTGCCGAACGGCATGATGGCGGCGTTTCGCGGCAAGGAGC-TTT 41592 || ||||| | | |||||||||||||||||||||| |||| | | | ||| | | Sbjct 139034 CACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGC-ATTCGTCGGACGCAGCGTCT 139092 Query 41593 GGTTCTGCGAGCCGTGGCGCCCGCATGCGTACCCGCAGAAGTACGTGCTGACGATGGATT 41652 ||||||||||| |||||||| || | | ||| | || ||| | ||| || Sbjct 139093 ACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGACA 139152 Query 41653 ACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCAGC 41712 | || | || |||||||| | ||| | | | || ||| |||| | | | | Sbjct 139153 GCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAATC 139212 Query 41713 CCTACATCGTCTCCGGCGCGTCGCCGGACGCCATGTCGCAGGAAAAGCTCGAACTCAACC 41772 ||||| || | ||||| ||||| | ||| | |||||||||| || Sbjct 139213 CCTACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTCTCAAAAGCTCGAGTCGAATT 139272 Query 41773 TGCCGTGCATCAACGCGCGCGGGCTTGTCGACCTTGGCTATGCGATCGCCTATCCATCGC 41832 | || |||||||||||||| ||| | | || || || | ||| ||| |||||| Sbjct 139273 TCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGAGCA 139332 Query 41833 ACGATGGGCTCGT 41845 ||||||| || || Sbjct 139333 ACGATGGTCTTGT 139345 >seq7145 Length=2121 Score = 104 bits (114), Expect = 9e-18 Identities = 251/377 (67%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 57645 CCGTGCTGCTGCACGAAGCGTTCCACCAGGGCGGCGAGCGGCTGGTGGGCGATCAGGCAT 57704 |||||||||| ||||||||||||||| |||| |||| | ||| | ||| | ||||| Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509 Query 57705 GGAATGGGCTGATGGGCCGCCTGGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCGGTC 57764 ||||| ||| || ||||| | |||||| ||| ||| | || ||| | || Sbjct 510 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 569 Query 57765 GGGCGCGCGAGTTCTACGATCAGGCTCGGCAACGTGTCGCGCGCGCGCA---ACAGGCGG 57821 | || || |||| ||| ||| || | || || ||||| || | ||| | | Sbjct 570 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 629 Query 57822 GCGCCGTGCCGAACACGCTGACGTCGGAAGAATTCGGCGCCTACACGATCGAGCAGTACG 57881 || | || || | ||||| | |||||||||||||| || |||| || | |||| Sbjct 630 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 689 Query 57882 A-GCAGGCTCCGGCCGCGTTCCAGAAGTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 57940 | ||| || |||| |||| || ||||| || ||| | ||||| || ||||| Sbjct 690 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 748 Query 57941 TGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGACGCCGGCGCAGCTCCGTGCG 58000 ||| |||| || | |||||| ||| | || |||||||| || ||| | || || Sbjct 749 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 808 Query 58001 CTGGCCGCTGCCGCGCT 58017 || ||| ||||||| Sbjct 809 CTCGCCTTGTCCGCGCT 825 >seq6427 Length=47605 Score = 104 bits (114), Expect = 9e-18 Identities = 251/377 (67%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 57645 CCGTGCTGCTGCACGAAGCGTTCCACCAGGGCGGCGAGCGGCTGGTGGGCGATCAGGCAT 57704 |||||||||| ||||||||||||||| |||| |||| | ||| | ||| | ||||| Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995 Query 57705 GGAATGGGCTGATGGGCCGCCTGGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCGGTC 57764 ||||| ||| || ||||| | |||||| ||| ||| | || ||| | || Sbjct 9996 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 10055 Query 57765 GGGCGCGCGAGTTCTACGATCAGGCTCGGCAACGTGTCGCGCGCGCGCA---ACAGGCGG 57821 | || || |||| ||| ||| || | || || ||||| || | ||| | | Sbjct 10056 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 10115 Query 57822 GCGCCGTGCCGAACACGCTGACGTCGGAAGAATTCGGCGCCTACACGATCGAGCAGTACG 57881 || | || || | ||||| | |||||||||||||| || |||| || | |||| Sbjct 10116 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 10175 Query 57882 A-GCAGGCTCCGGCCGCGTTCCAGAAGTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 57940 | ||| || |||| |||| || ||||| || ||| | ||||| || ||||| Sbjct 10176 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 10234 Query 57941 TGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGACGCCGGCGCAGCTCCGTGCG 58000 ||| |||| || | |||||| ||| | || |||||||| || ||| | || || Sbjct 10235 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 10294 Query 58001 CTGGCCGCTGCCGCGCT 58017 || ||| ||||||| Sbjct 10295 CTCGCCTTGTCCGCGCT 10311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201131887106760