Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_019917.1
Length=62952
Score E
Sequences producing significant alignments: (Bits) Value
seq73604 212 3e-50
seq76879 159 1e-34
seq48801 122 4e-23
seq7145 104 9e-18
seq6427 104 9e-18
>seq73604
Length=2001
Score = 212 bits (234), Expect = 3e-50
Identities = 652/994 (66%), Gaps = 31/994 (3%)
Strand=Plus/Plus
Query 40863 GGGTTCTCGGGAGAAATCCCGCGCCTTGTGCCGCGCCTGCTGCCCGACACCGCCGCGCAG 40922
|| ||||| || ||| |||||| || | ||||| || |||| || ||||| | |||
Sbjct 802 GGTTTCTCTGGCGAACAGCCGCGCATTATTCCGCGTATGTTGCCAGAAACCGCGTCACAG 861
Query 40923 AACGCGACGAACGCGCGGCTCGAGTCGGGCGGCCTGTCCCCATACCGCAAGCCGAAGTTC 40982
|| | ||| |||||||||| ||||| ||| | || ||| ||| || |
Sbjct 862 GCGGCAATCAACACGCGGCTCGACGACGGCGGGCTGACGCCTATGCGCCGACCG--GTGC 919
Query 40983 ATCACGCGGATCGACACGATCCCCGCCGGCCAGATCG---AGACGATCTTTCGGAACGGC 41039
| | ||||||| | ||| || ||| || | ||||| | | | || ||
Sbjct 920 A-------GGTCGACACAGTACCCA---GCAAGACCGCCAAAACGATATATAGAAAAAGC 969
Query 41040 GAGACGTGGATGGCGTGGGATAAGCC-GGTCTACGCGGCGCCGGGCCCGGTCGCGGCCGA 41098
| | ||| | || ||||| |||| ||| | || ||||| || |||||||| | ||
Sbjct 970 GGCGCTTGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGA 1028
Query 41099 TCGCCTCTACGTGATGGGCGACGGCGCTCCGAAGATGATCGTCGGCGGCACGACGTACCC 41158
|||||||||| | | ||||| |||| |||||| |||| ||||| |||||| || ||
Sbjct 1029 TCGCCTCTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCC 1088
Query 41159 GCTCGCGGTGCCGATGCCGAGC----GCCGCGCTCACCGCGGCGACGAGCGGAACGGGCA 41214
|||||| ||||| || || ||| || | || |||| | | ||||| |||
Sbjct 1089 GCTCGCTGTGCC-ATTCCCAGCCAATGCACTGGTCGCCGCAGTCTCA---GGAACAAGCA 1144
Query 41215 CGGGCGACGTGTTCTCGCGCGTCTACGTCTACACGTTCGTAACCGGGTTCGGCGAGGAAT 41274
| ||| | || ||||| ||| || || || | || || ||||| ||||||||
Sbjct 1145 CCTCGGACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAAT 1204
Query 41275 CCGAGCCTTCCGCCGT-ATCGAACGAAGTGAACTGGCAGGCGGGGCAGACCGTAACCCTC 41333
| || || | ||| | || | || | |||| | |||||||| | |||||
Sbjct 1205 CGGAACCAAGCCCCGCCAGCGTGCCC-GTAGATTGGCGCCCCGGGCAGACGATGACCCTT 1263
Query 41334 TCTGGATTTCAGGCGGCGCCGGCTGGCCGCAATATCACGAAGCAGCGCATCTACCGGTCG 41393
|| || || |||| ||||||||||| || |||| | ||||| ||||| ||
Sbjct 1264 TCGGGCTTCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCC 1323
Query 41394 CAAACGAGCCTTTCGGGCACCGACCTTTACTTCATCGCCGAACGCGACGCATCTGCTGCT 41453
||| || | |||||| | | || ||||||||||| | || | || ||
Sbjct 1324 CAATCGGGGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCA 1383
Query 41454 AACTTCGTCGATAATGT-GCCTTTGACGGATCAAAACGAGCCGCTTCCGTCGCTCGAATG 41512
||||| |||||| | || | |||| || || || ||||| ||||| || | |
Sbjct 1384 AACTTTGTCGATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTA 1442
Query 41513 GAATGCGCCGCCCGACGACCTGACGGGCCTTATCTCGCTGCCGAACGGCATGATGGCGGC 41572
|||||||| ||| ||||||| | ||| || ||| | || || |||||||| ||||| ||
Sbjct 1443 CAATGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGC 1502
Query 41573 GTTTCGC-GGCAAGGAGCTTTGGTTCTGCGAGCCGTGGCGCCCGCATGCGTACCCGCAGA 41631
||||| ||| | | | |||| | |||| || |||||||| | ||| |||
Sbjct 1503 -CTTCGCTGGCCGAAAAGTCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGA 1561
Query 41632 AGTACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCG 41691
||| |||| |||| | ||||| | | || | || |||||| |||| || | || |
Sbjct 1562 AGTTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGG 1621
Query 41692 TGGTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCGGACGCCATGTCGC 41751
| || ||| ||| ||||||| | || |||||| || |||| || | ||| ||
Sbjct 1622 TCGTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGC 1681
Query 41752 AGGAAAAGCTCGAACTCAACCTGCCGTGCATCAACGCGCGCGGGCTTGTCGACCTTGGCT 41811
| | ||| |||||| || ||||| || || ||||| || || | || ||||| ||
Sbjct 1682 AAGTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAA 1741
Query 41812 ATGCGATCGCCTATCCATCGCACGATGGGCTCGT 41845
||||| | |||||| || |||| || || ||
Sbjct 1742 TGGCGATTGTCTATCCTTCCAACGAGGGACTGGT 1775
>seq76879
Length=36809
Score = 159 bits (176), Expect = 1e-34
Identities = 329/481 (68%), Gaps = 20/481 (4%)
Strand=Plus/Plus
Query 26470 CGACAGCAAGAGAATCGGGCCGAGATGGCAGTGGATGAGGACTACTATGACAATATCCAG 26529
||||| || || ||||| || | ||| || || || |||| ||| |||||||| |||
Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292
Query 26530 TGGACGCAGGACGAGATCGACGAG---TTGAAGGAGCGCGGACAGGCGCCGACCGTCTAC 26586
||| ||| || ||| || | || |||||||| ||||| |||| |||| ||||||
Sbjct 26293 TGG-CGC--GAAGAGGACGCCCAGACGTTGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349
Query 26587 AACGTCATCGCGCAGAGCGTGAACTGGATCATCGGCAGCGAGAAGCGCGGCCGTTCCGAC 26646
|||||||| | | ||| | ||| | | || | || ||| || ||||
Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409
Query 26647 TTCAAGGTGCTGCCGCGTCGCAAGGAAGGCGGCAAGGCAGCCGAGCGCAAGACCGCCCTC 26706
| |||| | ||||| || |||||||||| | ||||| | || |||||||||||| | |||
Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469
Query 26707 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTCGAGGAG 26766
| ||||| ||||| |||||||||| || || ||| | || |||||||||||
Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529
Query 26767 GCGACGAAAGCTGGTATCGGCTGGCTGGAATCGCAGGTGCAGGACGAGAACGACGGCGAG 26826
|| ||| | || || |||||||| || | || ||| | ||||| |||||
Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGA--GGATGGCGCA----AACCACGACAGCGAG 26583
Query 26827 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATACTCTGGGACAGCAC-GTA 26879
| |||| ||| || | ||||||||||| ||||| || ||||||||| | | |
Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643
Query 26880 CCGCCGGCTCGACATGGACGACTGCCGGTACATCTTCCGCGTGAAGTGGGTCGACCTCGA 26939
| | ||||| || ||| | || | |||||||| |||||||| ||||||||
Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702
Query 26940 C 26940
|
Sbjct 26703 C 26703
>seq48801
Length=253520
Score = 122 bits (134), Expect = 4e-23
Identities = 400/613 (65%), Gaps = 8/613 (1%)
Strand=Plus/Plus
Query 41237 CTACGTCTACACGTTCGTAACCGGGTTCGGCGAGGAATCCGAGCCTTCCGCCGTATCGAA 41296
||||||||| || | ||| || | ||||||||||| | | || || | | |||||
Sbjct 138737 CTACGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTCGCCTGCTTCGAA 138796
Query 41297 CGAAGTGAACTGGCAGGCGGGGCAGACCGTAACCCTCTCTGGATT--TCAGGCGGCGCCG 41354
| | ||||| || | |||||| ||| || || || || || ||| || || ||
Sbjct 138797 CATCATTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGCC-CGTCG 138855
Query 41355 GCTGGCCGCAATATCACGAAGCAGCGCATCTACCGGTCGCAAACGAGCCTTTCGGGCACC 41414
| || || | || |||||||||||||| ||||| || || | | || |||
Sbjct 138856 CC-GGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGACC 138914
Query 41415 GACCTTTACTTCATCGCCGAACGCGACGCATCTGCTGCTAACTTCGTCGATAATGT-GCC 41473
| | || ||||||||||||||| |||| | |||| |||||| || || ||| ||
Sbjct 138915 TATTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCGCG 138974
Query 41474 TTTGACGGATCAAAACGAGCCGCTTCCGTCGCTCGAATGGAATGCGCCGCCCGACGACCT 41533
|||||| || || || |||| || ||| || ||| | | ||| || | | ||
Sbjct 138975 GTTGACGCATTTCAA-GAAGCGCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCACT 139033
Query 41534 GACGGGCCTTATCTCGCTGCCGAACGGCATGATGGCGGCGTTTCGCGGCAAGGAGC-TTT 41592
|| ||||| | | |||||||||||||||||||||| |||| | | | ||| | |
Sbjct 139034 CACCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGC-ATTCGTCGGACGCAGCGTCT 139092
Query 41593 GGTTCTGCGAGCCGTGGCGCCCGCATGCGTACCCGCAGAAGTACGTGCTGACGATGGATT 41652
||||||||||| |||||||| || | | ||| | || ||| | ||| ||
Sbjct 139093 ACTTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGACA 139152
Query 41653 ACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCAGC 41712
| || | || |||||||| | ||| | | | || ||| |||| | | | |
Sbjct 139153 GCGACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAATC 139212
Query 41713 CCTACATCGTCTCCGGCGCGTCGCCGGACGCCATGTCGCAGGAAAAGCTCGAACTCAACC 41772
||||| || | ||||| ||||| | ||| | |||||||||| ||
Sbjct 139213 CCTACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTCTCAAAAGCTCGAGTCGAATT 139272
Query 41773 TGCCGTGCATCAACGCGCGCGGGCTTGTCGACCTTGGCTATGCGATCGCCTATCCATCGC 41832
| || |||||||||||||| ||| | | || || || | ||| ||| ||||||
Sbjct 139273 TCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGAGCA 139332
Query 41833 ACGATGGGCTCGT 41845
||||||| || ||
Sbjct 139333 ACGATGGTCTTGT 139345
>seq7145
Length=2121
Score = 104 bits (114), Expect = 9e-18
Identities = 251/377 (67%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 57645 CCGTGCTGCTGCACGAAGCGTTCCACCAGGGCGGCGAGCGGCTGGTGGGCGATCAGGCAT 57704
|||||||||| ||||||||||||||| |||| |||| | ||| | ||| | |||||
Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509
Query 57705 GGAATGGGCTGATGGGCCGCCTGGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCGGTC 57764
||||| ||| || ||||| | |||||| ||| ||| | || ||| | ||
Sbjct 510 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 569
Query 57765 GGGCGCGCGAGTTCTACGATCAGGCTCGGCAACGTGTCGCGCGCGCGCA---ACAGGCGG 57821
| || || |||| ||| ||| || | || || ||||| || | ||| | |
Sbjct 570 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 629
Query 57822 GCGCCGTGCCGAACACGCTGACGTCGGAAGAATTCGGCGCCTACACGATCGAGCAGTACG 57881
|| | || || | ||||| | |||||||||||||| || |||| || | ||||
Sbjct 630 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 689
Query 57882 A-GCAGGCTCCGGCCGCGTTCCAGAAGTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 57940
| ||| || |||| |||| || ||||| || ||| | ||||| || |||||
Sbjct 690 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 748
Query 57941 TGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGACGCCGGCGCAGCTCCGTGCG 58000
||| |||| || | |||||| ||| | || |||||||| || ||| | || ||
Sbjct 749 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 808
Query 58001 CTGGCCGCTGCCGCGCT 58017
|| ||| |||||||
Sbjct 809 CTCGCCTTGTCCGCGCT 825
>seq6427
Length=47605
Score = 104 bits (114), Expect = 9e-18
Identities = 251/377 (67%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 57645 CCGTGCTGCTGCACGAAGCGTTCCACCAGGGCGGCGAGCGGCTGGTGGGCGATCAGGCAT 57704
|||||||||| ||||||||||||||| |||| |||| | ||| | ||| | |||||
Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995
Query 57705 GGAATGGGCTGATGGGCCGCCTGGACGCGCTGCACCGGCAGGCGCGGCAGTCGAGCGGTC 57764
||||| ||| || ||||| | |||||| ||| ||| | || ||| | ||
Sbjct 9996 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 10055
Query 57765 GGGCGCGCGAGTTCTACGATCAGGCTCGGCAACGTGTCGCGCGCGCGCA---ACAGGCGG 57821
| || || |||| ||| ||| || | || || ||||| || | ||| | |
Sbjct 10056 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 10115
Query 57822 GCGCCGTGCCGAACACGCTGACGTCGGAAGAATTCGGCGCCTACACGATCGAGCAGTACG 57881
|| | || || | ||||| | |||||||||||||| || |||| || | ||||
Sbjct 10116 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 10175
Query 57882 A-GCAGGCTCCGGCCGCGTTCCAGAAGTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 57940
| ||| || |||| |||| || ||||| || ||| | ||||| || |||||
Sbjct 10176 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 10234
Query 57941 TGGCTGCTGCGCCGCTTCGGCAAGCAGCTCGGCGACGTGACGCCGGCGCAGCTCCGTGCG 58000
||| |||| || | |||||| ||| | || |||||||| || ||| | || ||
Sbjct 10235 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 10294
Query 58001 CTGGCCGCTGCCGCGCT 58017
|| ||| |||||||
Sbjct 10295 CTCGCCTTGTCCGCGCT 10311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 201131887106760
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