Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq52475 114 4e-21 >seq52475 Length=1114 Score = 114 bits (126), Expect = 4e-21 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 29559 AAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAA-GCCGGACTTCATCAT 29617 ||||||||| ||| ||||||| || |||||| | ||| |||||| |||||||| Sbjct 556 AAGGCCCGAGCCGAAGAGCAGATCGTTGGATGGTTCAG-CACTGTGCCGGATTTCATCAT 498 Query 29618 CACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGA 29677 ||| | | |||||| ||| || | || || ||| || |||||||| ||| | || Sbjct 497 TACGATTGATGCTGAGTATGCGGTGGAGTGTTCAGATGCTGAGTTCTGCGCGCTGATTGA 438 Query 29678 GCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCG 29737 ||||||||||||||| || ||||| |||| || || |||| ||| || | | Sbjct 437 GCATGAGCTTTATCATGCTGCACAAGAGCGCGATGCATTCGGTGCACCAAAG-TTCAGCA 379 Query 29738 CGA-CTCAGGTAAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTGGCG 29796 || | |||| ||| | |||||| | || ||||| || || || |||||||||| Sbjct 378 AGAGCACAGGCCGGCCAGTATTCTGCATGAGGGGGCATGACGTGGAAGAGTTCGTTGGCG 319 Query 29797 TTGTCCGTCGATATGGCGC 29815 |||| ||||||||||| || Sbjct 318 TTGTTCGTCGATATGGGGC 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152093822914320