Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq4033 125 7e-24
>seq4033
Length=1341
Score = 125 bits (138), Expect = 7e-24
Identities = 505/781 (65%), Gaps = 21/781 (3%)
Strand=Plus/Minus
Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTG-ACAGTTCTCAATAGTCTGCACGAA 38694
|| |||||||| | |||||| | || || || || ||| || ||||| ||||| || ||
Sbjct 1082 GCGATTTCTTCAAGGCACGCTACTTTTAAACCCTGTACATTT-TCAATCGTCTGTACAAA 1024
Query 38695 TTGACCA-GCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTC 38753
|| | ||||| ||||| | || ||||| || |||||||| | ||| || || |
Sbjct 1023 C-GATGATGCTTCATGAAGACTTTCATGCGTTCCCGTATCAAGCCATGCAAAGCCACGCC 965
Query 38754 CGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCT 38813
| | | ||| || | | ||| | || | || ||| | ||| | ||| || |
Sbjct 964 CTAATAATTCAACGTTGAGCTTACCATCATTTAAGTACATCTCATTTAACGTAGTTATTT 905
Query 38814 CCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCAT 38873
| || |||||||| || || |||| | | || || | ||| |||||||
Sbjct 904 CAAGCTCTCCACGATGTGATGGTTTTACCTGTTTCGCTAATTCGACTACACGATTATCAT 845
Query 38874 AGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAG 38933
| ||||| || ||||| || ||||||| || || || ||||| ||||||||||| || |
Sbjct 844 AAAAATATAACCCTGTAACTGCATAATTAGACTTTGGTTTTTCTGGTTTCTCTTCGATTG 785
Query 38934 AAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993
|||| |||| | | | |||||||| ||||| || || || || ||||||||
Sbjct 784 AAATTGCTTTCATGTCTTTGTCGAATTCAACAACACCAAAACGCTCTGGGTCTTTCACTT 725
Query 38994 AATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTCACTGGCGTTAATCAGTA 39053
||| || |||||| | ||||| | | | || ||| | || | | ||
Sbjct 724 GATAACC--AAATAC---CGTTGCCCC---CGTTTTCCTACTCGC-AGCACTTTTAAGGG 674
Query 39054 GTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCA-ACAGAGTCT 39112
||| | ||| ||| || | | | || || || | | | |||| ||| |||
Sbjct 673 TTTTGCTAAATGATTGACCATAATAAATATTATCGCCAAGCACTA-AGCAGACATTGTCG 615
Query 39113 TCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCTCGTGGCTCGGATTGG 39172
| || ||||| | || ||| || || || || | ||| | || ||| | |||
Sbjct 614 TTACCAATAAACTTTTCACCAATTATAAATGCCTGCGCCAATCCATCCGGCGAAGGTTGT 555
Query 39173 ATTGCGTAAGTGAGTTTTATCCC--AAACA-TAGACCCATCTCCGAGAAGATACTCAAAG 39229
||||| ||| | | ||||| || || || || |||| || | | | | ||||
Sbjct 554 ATTGCATAACTCAAGTTTATGCCGTAATCACTA---CCATTACCTAACAAACGTTTAAAG 498
Query 39230 TCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAAT 39289
||| | ||| | ||||| ||||| ||||| ||||| ||| | || | ||| |||
Sbjct 497 CTTTCGTTATCTTCCGGTGTCGTGATTATTAATATATCGCGAATTCCCGCTAGCATTAAT 438
Query 39290 ACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACA 39349
|||| ||||| || | ||| || || || || || ||||| | |||||| |||
Sbjct 437 GTAGATATTGGGTAATACACCATCGGCTTATCGTATACTGGGAGTAGTTGCTTTGATACA 378
Query 39350 CTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCATA 39409
| ||||| | || | ||| || || ||| ||||| || || ||||| |||||||||
Sbjct 377 CCACGTGTAAGTGGGTAAAGACGAGTGCCAGAACCTCCAGCTAATATAATTCCTTTCATA 318
Query 39410 A 39410
|
Sbjct 317 A 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472173602718400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |