Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq4033 125 7e-24 >seq4033 Length=1341 Score = 125 bits (138), Expect = 7e-24 Identities = 505/781 (65%), Gaps = 21/781 (3%) Strand=Plus/Minus Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTG-ACAGTTCTCAATAGTCTGCACGAA 38694 || |||||||| | |||||| | || || || || ||| || ||||| ||||| || || Sbjct 1082 GCGATTTCTTCAAGGCACGCTACTTTTAAACCCTGTACATTT-TCAATCGTCTGTACAAA 1024 Query 38695 TTGACCA-GCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTC 38753 || | ||||| ||||| | || ||||| || |||||||| | ||| || || | Sbjct 1023 C-GATGATGCTTCATGAAGACTTTCATGCGTTCCCGTATCAAGCCATGCAAAGCCACGCC 965 Query 38754 CGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCT 38813 | | | ||| || | | ||| | || | || ||| | ||| | ||| || | Sbjct 964 CTAATAATTCAACGTTGAGCTTACCATCATTTAAGTACATCTCATTTAACGTAGTTATTT 905 Query 38814 CCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCAT 38873 | || |||||||| || || |||| | | || || | ||| ||||||| Sbjct 904 CAAGCTCTCCACGATGTGATGGTTTTACCTGTTTCGCTAATTCGACTACACGATTATCAT 845 Query 38874 AGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAG 38933 | ||||| || ||||| || ||||||| || || || ||||| ||||||||||| || | Sbjct 844 AAAAATATAACCCTGTAACTGCATAATTAGACTTTGGTTTTTCTGGTTTCTCTTCGATTG 785 Query 38934 AAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993 |||| |||| | | | |||||||| ||||| || || || || |||||||| Sbjct 784 AAATTGCTTTCATGTCTTTGTCGAATTCAACAACACCAAAACGCTCTGGGTCTTTCACTT 725 Query 38994 AATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTCACTGGCGTTAATCAGTA 39053 ||| || |||||| | ||||| | | | || ||| | || | | || Sbjct 724 GATAACC--AAATAC---CGTTGCCCC---CGTTTTCCTACTCGC-AGCACTTTTAAGGG 674 Query 39054 GTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCA-ACAGAGTCT 39112 ||| | ||| ||| || | | | || || || | | | |||| ||| ||| Sbjct 673 TTTTGCTAAATGATTGACCATAATAAATATTATCGCCAAGCACTA-AGCAGACATTGTCG 615 Query 39113 TCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCTCGTGGCTCGGATTGG 39172 | || ||||| | || ||| || || || || | ||| | || ||| | ||| Sbjct 614 TTACCAATAAACTTTTCACCAATTATAAATGCCTGCGCCAATCCATCCGGCGAAGGTTGT 555 Query 39173 ATTGCGTAAGTGAGTTTTATCCC--AAACA-TAGACCCATCTCCGAGAAGATACTCAAAG 39229 ||||| ||| | | ||||| || || || || |||| || | | | | |||| Sbjct 554 ATTGCATAACTCAAGTTTATGCCGTAATCACTA---CCATTACCTAACAAACGTTTAAAG 498 Query 39230 TCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAAT 39289 ||| | ||| | ||||| ||||| ||||| ||||| ||| | || | ||| ||| Sbjct 497 CTTTCGTTATCTTCCGGTGTCGTGATTATTAATATATCGCGAATTCCCGCTAGCATTAAT 438 Query 39290 ACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACA 39349 |||| ||||| || | ||| || || || || || ||||| | |||||| ||| Sbjct 437 GTAGATATTGGGTAATACACCATCGGCTTATCGTATACTGGGAGTAGTTGCTTTGATACA 378 Query 39350 CTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCATA 39409 | ||||| | || | ||| || || ||| ||||| || || ||||| ||||||||| Sbjct 377 CCACGTGTAAGTGGGTAAAGACGAGTGCCAGAACCTCCAGCTAATATAATTCCTTTCATA 318 Query 39410 A 39410 | Sbjct 317 A 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472173602718400