Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq26538 352 3e-92 seq55365 167 3e-36 seq12481 98.7 1e-15 >seq26538 Length=599248 Score = 352 bits (390), Expect = 3e-92 Identities = 675/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 372545 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 372604 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| |||| | || ||||| || || || | ||||| ||||| || Sbjct 372605 AAACAAGTGGTGCGCGTGCAACAG---CCAGTTCAAATCACCAGCTCCGAAAACGCACAC 372661 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 372662 AGAGCGCACGTGAACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 372721 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || |||| || || | Sbjct 372722 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTTTG 372781 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 372782 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 372840 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| ||||| || | ||| ||||| |||| | ||| || | | | Sbjct 372841 CATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 372900 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || || || || || ||||| || || | ||| Sbjct 372901 GCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTG 372960 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 372961 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 373019 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| | ||||| ||||| || Sbjct 373020 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTCTCTCCGTTTCTAGGTTG 373079 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 373080 TTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 373139 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| || ||| || |||||| | Sbjct 373140 TCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCATCCGGTAGAGGTCCTGC 373199 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 373200 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 373259 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAACA 160827 ||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | | Sbjct 373260 CTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGGA 373318 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || | |||| |||||||| | ||||| | ||||||||| |||||||||| Sbjct 373319 T-TTCTCTGATTTTCTATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCCC 373377 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 373378 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 373437 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | || | ||| || ||| || | | | | || || ||| ||||||| ||| || Sbjct 373438 ATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAAG 373497 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 | ||||| | |||||||| ||||| Sbjct 373498 CGCAATCACCAGTCATGTTTATATA 373522 >seq55365 Length=126199 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 41057 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 40998 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 40997 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGAGTCCC 40938 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 40937 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 40878 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 40877 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 40818 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 40817 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 40758 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 40757 ACATCCTGGGTCACCAC 40741 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 43910 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 43855 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | ||||| | ||| ||| |||||||| Sbjct 43854 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCATT 43795 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | || || ||||||||||||||||| || | || |||||| | || Sbjct 43794 GGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGAT 43735 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 43734 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 43694 >seq12481 Length=2138255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 460646 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 460705 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| ||| |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 460706 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 460765 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 460766 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 460825 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| ||| || || |||| |||||||||||||| | | ||| || | Sbjct 460826 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 460885 Query 176422 TACA 176425 | || Sbjct 460886 TGCA 460889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576661317643200