Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq26538 352 3e-92
seq55365 167 3e-36
seq12481 98.7 1e-15
>seq26538
Length=599248
Score = 352 bits (390), Expect = 3e-92
Identities = 675/985 (69%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || ||
Sbjct 372545 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 372604
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| |||| | || ||||| || || || | ||||| ||||| ||
Sbjct 372605 AAACAAGTGGTGCGCGTGCAACAG---CCAGTTCAAATCACCAGCTCCGAAAACGCACAC 372661
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | ||| |||||| |||| |||||||| | || || || | ||||| |||||
Sbjct 372662 AGAGCGCACGTGAACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 372721
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||||||||| || ||||||||||| ||||| |||||||| || |||| || || |
Sbjct 372722 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTTTG 372781
Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350
| | ||| || | | | |||| | |||| || | ||| | |||||||| || | |
Sbjct 372782 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 372840
Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410
| || |||||||| ||||| || | ||| ||||| |||| | ||| || | | |
Sbjct 372841 CATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 372900
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| |||| || || || | || || || || || ||||| || || | |||
Sbjct 372901 GCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTG 372960
Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529
| | ||| || ||| ||| ||| || |||| | || | ||| ||||| |
Sbjct 372961 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 373019
Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589
| | |||| |||||||| | |||| || | |||||| | ||||| ||||| ||
Sbjct 373020 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTCTCTCCGTTTCTAGGTTG 373079
Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649
|| | || | | || |||| | |||| || || ||||| || || | |||||
Sbjct 373080 TTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 373139
Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709
|| ||||||| | ||||||| ||||||||| || ||| || |||||| |
Sbjct 373140 TCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCATCCGGTAGAGGTCCTGC 373199
Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769
||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | |
Sbjct 373200 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 373259
Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAACA 160827
||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | |
Sbjct 373260 CTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGGA 373318
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
| || || | |||| |||||||| | ||||| | ||||||||| ||||||||||
Sbjct 373319 T-TTCTCTGATTTTCTATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCCC 373377
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||||
Sbjct 373378 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 373437
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
| || | ||| || ||| || | | | | || || ||| ||||||| ||| ||
Sbjct 373438 ATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAAG 373497
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
| ||||| | |||||||| |||||
Sbjct 373498 CGCAATCACCAGTCATGTTTATATA 373522
>seq55365
Length=126199
Score = 167 bits (184), Expect = 3e-36
Identities = 227/317 (72%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | |||| || ||||| || || || || || || ||||||||| ||
Sbjct 41057 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 40998
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || | || || |||| |||||||||||| || || | |||||||| ||| |||
Sbjct 40997 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGAGTCCC 40938
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || || || | ||| || |||||||| || |||||||||
Sbjct 40937 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 40878
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| |
Sbjct 40877 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 40818
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452
|| || | | ||||| || ||||| | ||||| || ||||||||||| |||
Sbjct 40817 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 40758
Query 168453 TCATCTTGAGTTACGAC 168469
|||| || || || ||
Sbjct 40757 ACATCCTGGGTCACCAC 40741
Score = 120 bits (132), Expect = 4e-22
Identities = 161/221 (73%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941
|||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || ||
Sbjct 43910 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 43855
Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001
|| || || ||||| || ||||| | || | ||||| | ||| ||| ||||||||
Sbjct 43854 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCATT 43795
Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061
| | ||| | ||| | || || ||||||||||||||||| || | || |||||| | ||
Sbjct 43794 GGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGAT 43735
Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| ||| || || || || | |||||||| || |||||||
Sbjct 43734 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 43694
>seq12481
Length=2138255
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||
Sbjct 460646 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 460705
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| ||| |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 460706 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 460765
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || |
Sbjct 460766 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 460825
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| ||| || || |||| |||||||||||||| | | ||| || |
Sbjct 460826 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 460885
Query 176422 TACA 176425
| ||
Sbjct 460886 TGCA 460889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576661317643200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |