Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq6427 462 5e-126 >seq6427 Length=47605 Score = 462 bits (512), Expect = 5e-126 Identities = 957/1416 (68%), Gaps = 11/1416 (1%) Strand=Plus/Minus Query 3956 TTCTGGCGCAAATCCATTTCTTCCAAGATAAGCGGGTTACCGCTTGAGGCCGCTTTCATT 4015 |||||||| | ||||||||||| | ||||| || || ||| | || || ||||| Sbjct 8340 TTCTGGCGAAGGTCCATTTCTTCAAGAATAAGTGGATTGCCGGACGCAGCGGCCTTCATC 8281 Query 4016 TCAGCTGCATTACTTGCCTCGCCGCCAACGTCCTCAATCTCACGCGTCTTGGTATTACCC 4075 || |||| ||| || || || | || || ||||| ||||||||| | |||| Sbjct 8280 TCCGCTGAATTGGCAGCTTCACCCGAGATATCTTCTATCTCGCGCGTCTTGATGCCACCC 8221 Query 4076 TTGCGCACCTGCTCAATAAATCGCGCCTTGGTTTCAATGGTCTGCCACATACGGCTATCA 4135 ||||||| ||||| || || || |||||| || || |||||||| ||| || Sbjct 8220 TTGCGCATCTGCTGGATGAACCGTGCCTTGACCTCGATTGTCTGCCATTGACGCGCGTCG 8161 Query 4136 AGCGTCTGCTTGGTTGCGTAGCGGTTAATCTCAACCTCAAAGCCATCAGGATCACGCTCA 4195 ||||| | |||||| ||||| || ||||| | |||||| ||||| ||||| | Sbjct 8160 AGCGTGTTCTTGGTCGCGTATCGCAGTATCTCGATCTCAAACCCATCGGGATCTTCGTTG 8101 Query 4196 TAAAGCTTGTTGCCCTGGCGAATGATACGACCTTCACGCTGTTCAAGGTCAGAAGGCCGC 4255 ||||||| |||||||||||| ||| || || || || ||||| || || ||||||||| Sbjct 8100 TAAAGCTCGTTGCCCTGGCGGATGCCCCGGCCGTCGCGTTGTTCGAGATCCGAAGGCCGC 8041 Query 4256 CATGGTGCATCCATGTGGTGTAGCGCAACAAGGCGCTCCTGCACGTTCATGCCGGCGCCC 4315 ||||| ||||| | ||||| || || || || | | || ||||| ||||||| ||| Sbjct 8040 CATGGCGCATCGAGATGGTGCAGGGCCACGAGTAGGTTTTGGACGTTGGTGCCGGCACCC 7981 Query 4316 ATCTTGGCGGTAGATCCAAACAACACACGAATGCGACCACTACGAACCTTACCAAACAGT 4375 ||||| | ||||| |||||||| | |||| ||||||| ||||||||| || ||||| Sbjct 7980 ATCTTCGGCGTAGAGCCAAACAAAATGCGAACGCGACCAGAACGAACCTTGCCGAACAGC 7921 Query 4376 TCTTCTTTCTGAAGCTCCGTATTAGCATCGTGAATAAATGCTATCTCCTGCTCAGGAATA 4435 ||||| |||||||| ||||| || ||||| ||||| || || || || || ||||| Sbjct 7920 TCTTCCTTCTGAAGGTCCGTGTTCGCATCATGAATGAAGGCGATTTCGGATTCGGGAATG 7861 Query 4436 CCCTTATTGATAAGCTTCTGGCGCAAGTCATCGTAAACACTGAAATCACCATCAAGCGCC 4495 ||| | ||| || |||| || || || || |||||||| | || || || ||| Sbjct 7860 CCCCGCTGGATCAGTTTCTCTTTCAGATCGTCATAGACACTGAATTTGCCGTCGAGTGCC 7801 Query 4496 GACAATTCATCAGGGCTCATCTTGTCGAGTTCATCCTGGGCGCGCTCATCACCGTTATCT 4555 ||||| || || ||| |||||||| | ||| ||| ||| || || || Sbjct 7800 ATGAATTCGTCCGGCGACATATTGTCGAGCTTGGTCTGCGCGGCCTCGTCGCCCGCGTCG 7741 Query 4556 GCTTTTTCAATCAGATCACGGATTCTCGCCGCCTCTTTTGCCTTAGCGCCTTTAGGTGTG 4615 || || | || || |||||| ||| | ||| ||||||| || ||| || || Sbjct 7740 GCCTTCCGGACCAATTCGCGGATTGCGGCCTCTTCTCTTGCCTTCGCCTTTTTCGGGGTA 7681 Query 4616 CTCAAGTCGATGAATACCAACTGAGCGCCTTTATCTGCACT--CCATTGGTCATAGATAC 4673 | |||||||| |||| ||| | ||| | ||| | || ||| ||| | | || || Sbjct 7680 GAGAGATCGATGAACACCAGCTGTGTGCCCT--TCTTCTCTGCCCACTGGCCGT-GA-AC 7625 Query 4674 GCTTA--ATGTTGTCTGCTGCCTGATTTACTTTGCTACCTTCATAGTCGCCGTACATGGC 4731 || | || ||||| || || || || || ||| ||| ||| | | || Sbjct 7624 GCGGAGGATATTGTCAGCAGCGATATGGACCTTAGAACC--GGGAGTGTCCGGATA-CGC 7568 Query 4732 CGGGTCTATCATGCGCATATCAAGCGCCGCCTTCCTGGCATCACTCATTATCTTCAGCAT 4791 ||| | |||| |||||| || || || ||||| | ||| || ||| | ||||||||| Sbjct 7567 CGGATTGATCAGGCGCATGTCCAGGGCGGCCTTGCGGGCGTCGGACATCACCTTCAGCAT 7508 Query 4792 GTTATCCGCGCCCTTTTCAGGTTTCTTAGGCAAGTGCTCAGCACGCCAAACAAGACTCCC 4851 ||| || ||||||||| | ||||| |||| | ||| || || |||| || || Sbjct 7507 GTTGTCGCGGCCCTTTTCCGCCTTCTTCGGCAGATTCTCGGCGCGATAAACCAGCGATCC 7448 Query 4852 TTCAGGGTATGACTCGCGGCCATTCTCATCAGTGATAGGCTCGCCAATATAAGCGGCCTG 4911 ||||| | ||| || || || ||||| | |||||||| || || || Sbjct 7447 CGCAGGGAACGACAGCACACCGTTGTCGTCAGTAGTGCCTTCGCCAATGAAACGCGCTTG 7388 Query 4912 GTCATCGCTTCGAGTAACAACAACATTCTGAGGCTTACCGCCTTTAACCTTCGGTACAGG 4971 || | || ||| || || ||||||||||| ||||| || ||||| || | || Sbjct 7387 CTCCGCAGAGCGCTCAACCACGACGTTCTGAGGCTTGCCGCCCTTGACCTTTGGGAGCGG 7328 Query 4972 TAGGCGCTTGCCCTGGGCTGCCAGTTGGCGGTTAATGTCATCACGGTTGATAACATCACC 5031 | ||||| | ||||| || || || || || ||| |||| || ||| | Sbjct 7327 GAACTTTTTGCCAAGTGCTGCGAGCTGAGCCTTGATATCGTCATTCGTGATGACGTCAGC 7268 Query 5032 AAACGATAGATATCGCTGCATAAGCTCAGGGATGTTCACAAACTTACTGAAGCGACTATT 5091 ||| ||||| |||||||| ||||| || ||||| || || || |||||| | || Sbjct 7267 AAAACTCAGATAACGCTGCATCAGCTCCGGCATGTTTACGAATTTGGCGAAGCGTGTGTT 7208 Query 5092 TAGCTTGTAGGTGCCTGAAGGCGACAACTCCCAATCAGTAACAACCTCACCATACATGCG 5151 |||||||| | || || || || | ||||| || || ||||| ||||| | | || Sbjct 7207 GAGCTTGTACATCCCGGAGGGGGAGAGTTCCCAGTCCGTCACAACGTCACCGAATACTCG 7148 Query 5152 CGCCCATGCGTCAAAGTGCGCAATACCCTGGTCCTGTAATGTCTGGTAATCCAGGTAGCG 5211 ||||| ||||| || |||| | || | ||| | | || || ||||| || || Sbjct 7147 TGCCCAGGCGTCGAAATGCGACACGCCAAGCGCCTTCAGCGCCTTGTTGTCCAGATATCG 7088 Query 5212 CTGCATGGTGTACATTTCTGCCATGGTATTACTGATCGGCGTGCCGGTGGCAAATACCAC 5271 ||| | || ||||| || ||||| || || || |||||| || ||||| ||||| Sbjct 7087 CTGGAGCGTATACATCTCGGCCATTGTGTTGGAGAGCGGCGTACCTGTGGCCGTCACCAC 7028 Query 5272 GTTGTTCCCGCCAGTTTTTTCCAGGACAAACTGAGTTTTCATAAACAGGTCTGCCGCCTT 5331 ||| || |||| || |||| || | | |||||||| ||| ||| || ||||| Sbjct 7027 GTTCTTGTCGCCGGTGCGCTCCAACACCATCGACATTTTCATATACATGTCGGCGGCCTT 6968 Query 5332 CTGGCTACCTTGCGGATTACCAAGGCCGGCAACGCG 5367 |||||| || || ||| || || || ||||| || Sbjct 6967 CTGGCTTCCGGCCGCATTTCCTAGACCAGCAACACG 6932 Score = 260 bits (288), Expect = 3e-65 Identities = 339/466 (73%), Gaps = 2/466 (0%) Strand=Plus/Minus Query 5644 CTTACCAAACGATGAGTGCGCAACAATAACAGCATCCCAATCACCAGTAGCAATGCGAGC 5703 ||| || |||||||| || || ||||| || || |||||||| || || ||||| ||||| Sbjct 6655 CTTGCCGAACGATGAATGAGCGACAATCACCGCGTCCCAATCGCCGGTTGCAATTCGAGC 6596 Query 5704 AAATAAGCGCTTACGGTTGCCTTTCTCAAAGTCCTTCTTGGTGGCCGCCAGCACATTTGC 5763 ||| | | ||| ||||| | ||| ||||||||||| ||||| |||||||| || || Sbjct 6595 AAACAGCCTCTTGCGGTTCTCGGCCTCGAAGTCCTTCTTCGTGGCGGCCAGCACTTTCGC 6536 Query 5764 GCCAGGGTAAAGTTTGGTGAAGTCCTCTGCCCATTGCCCGACCAAGTGATTAGGAACAAC 5823 || ||||| |||||| |||| || | ||||| ||||| || | ||||| |||||| Sbjct 6535 ACCCGGGTAGAGTTTGATGAAATCGGCCGCCCACTGCCCAACAAGATGATTGGGAACAGT 6476 Query 5824 AAACATTGGTTTCTTAGCTCGGCCCATACGGCGCATTTCCATAGCGCCAGCAACCATGGT 5883 | | || || || ||| |||| || || ||| | |||||| || ||| | | | Sbjct 6475 CAGAAGCGGCTTTTTCGCTTGGCCGATGCGCCGCTTCTCCATAACGGAAGCGATGAGCGC 6416 Query 5884 GAAAGTCTTACCAGCACCAACAACATGGTCAAGCAAAGTA-GTGCCTGACTGTACGATAC 5942 ||| ||||| |||||||| ||||| || || |||| | ||||| ||||| | | | Sbjct 6415 GAACGTCTTGCCAGCACCCACAACGTGATCG-GCAAGCGACGTGCCAGACTGCAGCGTCC 6357 Query 5943 GCCAAACAGCGTTGGCCTGGTGTGGGCGCAACTTGATAATGTCGTCACTGACCTTTCCAG 6002 |||| ||| ||| ||||| |||||||| ||| ||||||||| | |||||| || | Sbjct 6356 GCCAGACAAAGTTCTTCTGGTTCGGGCGCAAAGTGACAATGTCGTCGCCGACCTTGCCCG 6297 Query 6003 GGAAAGTAAGGTGCGAACCATCAAACTCACGCAAGCGATCGGTGTTGAATGTGTCGTTAT 6062 | || | || ||||| || || ||| | || | | |||||||||||| |||||||| | Sbjct 6296 GAAACGAGAGATGCGAGCCGTCGAACACCCGAAGGACATCGGTGTTGAACGTGTCGTTGT 6237 Query 6063 AAATCCTGGTCAACCGATCACGCCGCGCATCATCCTGCCAAACCCA 6108 | | || | || | | ||||| || | ||| |||||||||| ||| Sbjct 6236 ACAACCGGCCCAGCTGCTCACGACGGGAATCGTCCTGCCAAAGCCA 6191 Score = 197 bits (218), Expect = 3e-46 Identities = 333/474 (70%), Gaps = 11/474 (2%) Strand=Plus/Minus Query 7502 TCAGTTGTAACTTCTGTCCCGGCGTTCTTCAGGAATGCGTTGTTGGGCAAGCGAACAGCG 7561 |||||||| || || || ||||| |||||| |||| || ||||||||||| || | ||| Sbjct 4791 TCAGTTGTCACGTCAGTTCCGGCATTCTTCTGGAAAGCATTGTTGGGCAATCGGATTGCG 4732 Query 7562 CCAAGAAAGTCTGCCCGATTAGCCATATACTCACGCGCTGCCTGGTTGCTCTGAC-CATC 7620 ||||| | || || || | || |||||| ||||| || | || || | | | || Sbjct 4731 CCAAGCAGATCCGCACGGTCAGAGATATACCGGCGCGC---CTTGCTG-TCGGTCGCGTC 4676 Query 7621 CAT-AAGGCGGTTAGATACAACCATTGCCAGCACGCCGCCAGGCTTCAGTCCATCAAGAC 7679 | || ||| || | ||| ||||| || ||||| ||| |||||||| ||||||| | Sbjct 4675 AAGGAACGCG-TTGGTTACGACCATCGCGAGCACACCGTGCGGCTTCAGCCCATCAATGC 4617 Query 7680 TCTTGGCAAAGAAGTAATTGTGAATGCTGAACTTGGATAAATCCTTGCGCTTACCGTCAT 7739 |||||||||||||| ||||||| |||||||||||| | | ||||| ||||| Sbjct 4616 TCTTGGCAAAGAAGAAATTGTGGATGCTGAACTTGTTGAGGGCACGGCGCTGCTTGTCAT 4557 Query 7740 AAAGCTTTTGGCTACCAAAGGGCGGATTACCTATTGCAAGATCGAAATAACCGTCTGGCA 7799 | || || |||||||| |||||||| || || ||||| || || | ||||| | Sbjct 4556 AGAGGCGTTCACTACCAAATGGCGGATTGCCGATCGCAAGGTCAAAGTGCTGATCTGGGA 4497 Query 7800 TAGTAAAATCCTGGAACCCCATTGGTGTTTTAATGTTTGCACCAGGGTAAAGGTGCGAGG 7859 || || || || || || | |||| | ||||| || | || || |||| | | Sbjct 4496 CAGCGAACTCTTGAAAACCGACAGGTGCCTGGATGTTGGCGGCCGGATAGAGGTTCTTCG 4437 Query 7860 CAATGCCTCCGGTAATATGATCAAGCTCTACGCCGGTGA--TCTGACTCTTACCGCGCAC 7917 | || || ||||| || ||||| ||||| || ||||||| | ||| | | |||||| Sbjct 4436 CGATACCACCGGTGATGTGATCGAGCTCCACCCCGGTGATGTTTGAACCCT--CGCGCAG 4379 Query 7918 ACCTGCCGGCATCATCCCTAAGAAATTACCAGTACCAACTGAAGGCTCAAGCAC 7971 | ||||||||| || | ||| || |||| ||| || || || |||||||| Sbjct 4378 CGCGCCCGGCATCAAACCAAGGAAGTTGCCAGCACCGACCGACGGTTCAAGCAC 4325 Score = 91.5 bits (100), Expect = 4e-14 Identities = 199/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 6694 TGCCATAGCATCCTTGGCCGTTGTCGCTTTGGTGGGCGCATTATATGGTGACTGAGTGCG 6753 ||||| ||||||||||||| || | || ||||||| | ||||| || ||||| Sbjct 5602 TGCCAATGCATCCTTGGCCGACGTTACGTTCGTGGGCGGGCTGTATGGCTCTTGCGTGCG 5543 Query 6754 CTTGTAGAATATCGCCGCCTTTTGGGCGCTTGGCTTGCGTGATTGCTCGCCGGTTTTCTT 6813 |||| ||| |||| || || | || ||| ||| | ||||||||| | || Sbjct 5542 CTTGGTGAAGATCGGGGCTTTGCGTGCCGACGGCGCGCGCGGGGTCTCGCCGGTCGTTTT 5483 Query 6814 CGCCATTGCTGGCGTAATTCCTTTATCGAATGATTCTTCAAGGGCTGCAATTTGCGGCCA 6873 || || || | | || || ||||| ||||| || || | || |||||||| Sbjct 5482 GGCAATGGCCGCGCTGATCCCACGTTCGAAACCATCTTCGAGCGCAGATATCTGCGGCCA 5423 Query 6874 GGTAGGATCATCACGGAACAACCGTTTATTGGCATCTGAGTTTATTGGCCCATGAGACTT 6933 ||| ||||| || ||||||| ||||| ||||| || || || || ||||| || ||| Sbjct 5422 GGTCGGATCGTCGCGGAACAGACGTTTGTTGGCGTCGGAATTGATGGGCCCGTGTTTCTT 5363 Query 6934 AACAAACGCGTCATATTCACGATTAAGACGCGTGCGCAACGCGTCAAGTGCCGCATCT 6991 | || || || || | || |||||| |||||| ||| ||| ||||||| Sbjct 5362 TGCGAAGGCATCGTAGAAATCGTTGAGACGCTTGCGCAGGTTGTCCAGTTTCGCATCT 5305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123547257744960