Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_020488.1
Length=38682
Score E
Sequences producing significant alignments: (Bits) Value
seq6427 462 5e-126
>seq6427
Length=47605
Score = 462 bits (512), Expect = 5e-126
Identities = 957/1416 (68%), Gaps = 11/1416 (1%)
Strand=Plus/Minus
Query 3956 TTCTGGCGCAAATCCATTTCTTCCAAGATAAGCGGGTTACCGCTTGAGGCCGCTTTCATT 4015
|||||||| | ||||||||||| | ||||| || || ||| | || || |||||
Sbjct 8340 TTCTGGCGAAGGTCCATTTCTTCAAGAATAAGTGGATTGCCGGACGCAGCGGCCTTCATC 8281
Query 4016 TCAGCTGCATTACTTGCCTCGCCGCCAACGTCCTCAATCTCACGCGTCTTGGTATTACCC 4075
|| |||| ||| || || || | || || ||||| ||||||||| | ||||
Sbjct 8280 TCCGCTGAATTGGCAGCTTCACCCGAGATATCTTCTATCTCGCGCGTCTTGATGCCACCC 8221
Query 4076 TTGCGCACCTGCTCAATAAATCGCGCCTTGGTTTCAATGGTCTGCCACATACGGCTATCA 4135
||||||| ||||| || || || |||||| || || |||||||| ||| ||
Sbjct 8220 TTGCGCATCTGCTGGATGAACCGTGCCTTGACCTCGATTGTCTGCCATTGACGCGCGTCG 8161
Query 4136 AGCGTCTGCTTGGTTGCGTAGCGGTTAATCTCAACCTCAAAGCCATCAGGATCACGCTCA 4195
||||| | |||||| ||||| || ||||| | |||||| ||||| ||||| |
Sbjct 8160 AGCGTGTTCTTGGTCGCGTATCGCAGTATCTCGATCTCAAACCCATCGGGATCTTCGTTG 8101
Query 4196 TAAAGCTTGTTGCCCTGGCGAATGATACGACCTTCACGCTGTTCAAGGTCAGAAGGCCGC 4255
||||||| |||||||||||| ||| || || || || ||||| || || |||||||||
Sbjct 8100 TAAAGCTCGTTGCCCTGGCGGATGCCCCGGCCGTCGCGTTGTTCGAGATCCGAAGGCCGC 8041
Query 4256 CATGGTGCATCCATGTGGTGTAGCGCAACAAGGCGCTCCTGCACGTTCATGCCGGCGCCC 4315
||||| ||||| | ||||| || || || || | | || ||||| ||||||| |||
Sbjct 8040 CATGGCGCATCGAGATGGTGCAGGGCCACGAGTAGGTTTTGGACGTTGGTGCCGGCACCC 7981
Query 4316 ATCTTGGCGGTAGATCCAAACAACACACGAATGCGACCACTACGAACCTTACCAAACAGT 4375
||||| | ||||| |||||||| | |||| ||||||| ||||||||| || |||||
Sbjct 7980 ATCTTCGGCGTAGAGCCAAACAAAATGCGAACGCGACCAGAACGAACCTTGCCGAACAGC 7921
Query 4376 TCTTCTTTCTGAAGCTCCGTATTAGCATCGTGAATAAATGCTATCTCCTGCTCAGGAATA 4435
||||| |||||||| ||||| || ||||| ||||| || || || || || |||||
Sbjct 7920 TCTTCCTTCTGAAGGTCCGTGTTCGCATCATGAATGAAGGCGATTTCGGATTCGGGAATG 7861
Query 4436 CCCTTATTGATAAGCTTCTGGCGCAAGTCATCGTAAACACTGAAATCACCATCAAGCGCC 4495
||| | ||| || |||| || || || || |||||||| | || || || |||
Sbjct 7860 CCCCGCTGGATCAGTTTCTCTTTCAGATCGTCATAGACACTGAATTTGCCGTCGAGTGCC 7801
Query 4496 GACAATTCATCAGGGCTCATCTTGTCGAGTTCATCCTGGGCGCGCTCATCACCGTTATCT 4555
||||| || || ||| |||||||| | ||| ||| ||| || || ||
Sbjct 7800 ATGAATTCGTCCGGCGACATATTGTCGAGCTTGGTCTGCGCGGCCTCGTCGCCCGCGTCG 7741
Query 4556 GCTTTTTCAATCAGATCACGGATTCTCGCCGCCTCTTTTGCCTTAGCGCCTTTAGGTGTG 4615
|| || | || || |||||| ||| | ||| ||||||| || ||| || ||
Sbjct 7740 GCCTTCCGGACCAATTCGCGGATTGCGGCCTCTTCTCTTGCCTTCGCCTTTTTCGGGGTA 7681
Query 4616 CTCAAGTCGATGAATACCAACTGAGCGCCTTTATCTGCACT--CCATTGGTCATAGATAC 4673
| |||||||| |||| ||| | ||| | ||| | || ||| ||| | | || ||
Sbjct 7680 GAGAGATCGATGAACACCAGCTGTGTGCCCT--TCTTCTCTGCCCACTGGCCGT-GA-AC 7625
Query 4674 GCTTA--ATGTTGTCTGCTGCCTGATTTACTTTGCTACCTTCATAGTCGCCGTACATGGC 4731
|| | || ||||| || || || || || ||| ||| ||| | | ||
Sbjct 7624 GCGGAGGATATTGTCAGCAGCGATATGGACCTTAGAACC--GGGAGTGTCCGGATA-CGC 7568
Query 4732 CGGGTCTATCATGCGCATATCAAGCGCCGCCTTCCTGGCATCACTCATTATCTTCAGCAT 4791
||| | |||| |||||| || || || ||||| | ||| || ||| | |||||||||
Sbjct 7567 CGGATTGATCAGGCGCATGTCCAGGGCGGCCTTGCGGGCGTCGGACATCACCTTCAGCAT 7508
Query 4792 GTTATCCGCGCCCTTTTCAGGTTTCTTAGGCAAGTGCTCAGCACGCCAAACAAGACTCCC 4851
||| || ||||||||| | ||||| |||| | ||| || || |||| || ||
Sbjct 7507 GTTGTCGCGGCCCTTTTCCGCCTTCTTCGGCAGATTCTCGGCGCGATAAACCAGCGATCC 7448
Query 4852 TTCAGGGTATGACTCGCGGCCATTCTCATCAGTGATAGGCTCGCCAATATAAGCGGCCTG 4911
||||| | ||| || || || ||||| | |||||||| || || ||
Sbjct 7447 CGCAGGGAACGACAGCACACCGTTGTCGTCAGTAGTGCCTTCGCCAATGAAACGCGCTTG 7388
Query 4912 GTCATCGCTTCGAGTAACAACAACATTCTGAGGCTTACCGCCTTTAACCTTCGGTACAGG 4971
|| | || ||| || || ||||||||||| ||||| || ||||| || | ||
Sbjct 7387 CTCCGCAGAGCGCTCAACCACGACGTTCTGAGGCTTGCCGCCCTTGACCTTTGGGAGCGG 7328
Query 4972 TAGGCGCTTGCCCTGGGCTGCCAGTTGGCGGTTAATGTCATCACGGTTGATAACATCACC 5031
| ||||| | ||||| || || || || || ||| |||| || ||| |
Sbjct 7327 GAACTTTTTGCCAAGTGCTGCGAGCTGAGCCTTGATATCGTCATTCGTGATGACGTCAGC 7268
Query 5032 AAACGATAGATATCGCTGCATAAGCTCAGGGATGTTCACAAACTTACTGAAGCGACTATT 5091
||| ||||| |||||||| ||||| || ||||| || || || |||||| | ||
Sbjct 7267 AAAACTCAGATAACGCTGCATCAGCTCCGGCATGTTTACGAATTTGGCGAAGCGTGTGTT 7208
Query 5092 TAGCTTGTAGGTGCCTGAAGGCGACAACTCCCAATCAGTAACAACCTCACCATACATGCG 5151
|||||||| | || || || || | ||||| || || ||||| ||||| | | ||
Sbjct 7207 GAGCTTGTACATCCCGGAGGGGGAGAGTTCCCAGTCCGTCACAACGTCACCGAATACTCG 7148
Query 5152 CGCCCATGCGTCAAAGTGCGCAATACCCTGGTCCTGTAATGTCTGGTAATCCAGGTAGCG 5211
||||| ||||| || |||| | || | ||| | | || || ||||| || ||
Sbjct 7147 TGCCCAGGCGTCGAAATGCGACACGCCAAGCGCCTTCAGCGCCTTGTTGTCCAGATATCG 7088
Query 5212 CTGCATGGTGTACATTTCTGCCATGGTATTACTGATCGGCGTGCCGGTGGCAAATACCAC 5271
||| | || ||||| || ||||| || || || |||||| || ||||| |||||
Sbjct 7087 CTGGAGCGTATACATCTCGGCCATTGTGTTGGAGAGCGGCGTACCTGTGGCCGTCACCAC 7028
Query 5272 GTTGTTCCCGCCAGTTTTTTCCAGGACAAACTGAGTTTTCATAAACAGGTCTGCCGCCTT 5331
||| || |||| || |||| || | | |||||||| ||| ||| || |||||
Sbjct 7027 GTTCTTGTCGCCGGTGCGCTCCAACACCATCGACATTTTCATATACATGTCGGCGGCCTT 6968
Query 5332 CTGGCTACCTTGCGGATTACCAAGGCCGGCAACGCG 5367
|||||| || || ||| || || || ||||| ||
Sbjct 6967 CTGGCTTCCGGCCGCATTTCCTAGACCAGCAACACG 6932
Score = 260 bits (288), Expect = 3e-65
Identities = 339/466 (73%), Gaps = 2/466 (0%)
Strand=Plus/Minus
Query 5644 CTTACCAAACGATGAGTGCGCAACAATAACAGCATCCCAATCACCAGTAGCAATGCGAGC 5703
||| || |||||||| || || ||||| || || |||||||| || || ||||| |||||
Sbjct 6655 CTTGCCGAACGATGAATGAGCGACAATCACCGCGTCCCAATCGCCGGTTGCAATTCGAGC 6596
Query 5704 AAATAAGCGCTTACGGTTGCCTTTCTCAAAGTCCTTCTTGGTGGCCGCCAGCACATTTGC 5763
||| | | ||| ||||| | ||| ||||||||||| ||||| |||||||| || ||
Sbjct 6595 AAACAGCCTCTTGCGGTTCTCGGCCTCGAAGTCCTTCTTCGTGGCGGCCAGCACTTTCGC 6536
Query 5764 GCCAGGGTAAAGTTTGGTGAAGTCCTCTGCCCATTGCCCGACCAAGTGATTAGGAACAAC 5823
|| ||||| |||||| |||| || | ||||| ||||| || | ||||| ||||||
Sbjct 6535 ACCCGGGTAGAGTTTGATGAAATCGGCCGCCCACTGCCCAACAAGATGATTGGGAACAGT 6476
Query 5824 AAACATTGGTTTCTTAGCTCGGCCCATACGGCGCATTTCCATAGCGCCAGCAACCATGGT 5883
| | || || || ||| |||| || || ||| | |||||| || ||| | | |
Sbjct 6475 CAGAAGCGGCTTTTTCGCTTGGCCGATGCGCCGCTTCTCCATAACGGAAGCGATGAGCGC 6416
Query 5884 GAAAGTCTTACCAGCACCAACAACATGGTCAAGCAAAGTA-GTGCCTGACTGTACGATAC 5942
||| ||||| |||||||| ||||| || || |||| | ||||| ||||| | | |
Sbjct 6415 GAACGTCTTGCCAGCACCCACAACGTGATCG-GCAAGCGACGTGCCAGACTGCAGCGTCC 6357
Query 5943 GCCAAACAGCGTTGGCCTGGTGTGGGCGCAACTTGATAATGTCGTCACTGACCTTTCCAG 6002
|||| ||| ||| ||||| |||||||| ||| ||||||||| | |||||| || |
Sbjct 6356 GCCAGACAAAGTTCTTCTGGTTCGGGCGCAAAGTGACAATGTCGTCGCCGACCTTGCCCG 6297
Query 6003 GGAAAGTAAGGTGCGAACCATCAAACTCACGCAAGCGATCGGTGTTGAATGTGTCGTTAT 6062
| || | || ||||| || || ||| | || | | |||||||||||| |||||||| |
Sbjct 6296 GAAACGAGAGATGCGAGCCGTCGAACACCCGAAGGACATCGGTGTTGAACGTGTCGTTGT 6237
Query 6063 AAATCCTGGTCAACCGATCACGCCGCGCATCATCCTGCCAAACCCA 6108
| | || | || | | ||||| || | ||| |||||||||| |||
Sbjct 6236 ACAACCGGCCCAGCTGCTCACGACGGGAATCGTCCTGCCAAAGCCA 6191
Score = 197 bits (218), Expect = 3e-46
Identities = 333/474 (70%), Gaps = 11/474 (2%)
Strand=Plus/Minus
Query 7502 TCAGTTGTAACTTCTGTCCCGGCGTTCTTCAGGAATGCGTTGTTGGGCAAGCGAACAGCG 7561
|||||||| || || || ||||| |||||| |||| || ||||||||||| || | |||
Sbjct 4791 TCAGTTGTCACGTCAGTTCCGGCATTCTTCTGGAAAGCATTGTTGGGCAATCGGATTGCG 4732
Query 7562 CCAAGAAAGTCTGCCCGATTAGCCATATACTCACGCGCTGCCTGGTTGCTCTGAC-CATC 7620
||||| | || || || | || |||||| ||||| || | || || | | | ||
Sbjct 4731 CCAAGCAGATCCGCACGGTCAGAGATATACCGGCGCGC---CTTGCTG-TCGGTCGCGTC 4676
Query 7621 CAT-AAGGCGGTTAGATACAACCATTGCCAGCACGCCGCCAGGCTTCAGTCCATCAAGAC 7679
| || ||| || | ||| ||||| || ||||| ||| |||||||| ||||||| |
Sbjct 4675 AAGGAACGCG-TTGGTTACGACCATCGCGAGCACACCGTGCGGCTTCAGCCCATCAATGC 4617
Query 7680 TCTTGGCAAAGAAGTAATTGTGAATGCTGAACTTGGATAAATCCTTGCGCTTACCGTCAT 7739
|||||||||||||| ||||||| |||||||||||| | | ||||| |||||
Sbjct 4616 TCTTGGCAAAGAAGAAATTGTGGATGCTGAACTTGTTGAGGGCACGGCGCTGCTTGTCAT 4557
Query 7740 AAAGCTTTTGGCTACCAAAGGGCGGATTACCTATTGCAAGATCGAAATAACCGTCTGGCA 7799
| || || |||||||| |||||||| || || ||||| || || | ||||| |
Sbjct 4556 AGAGGCGTTCACTACCAAATGGCGGATTGCCGATCGCAAGGTCAAAGTGCTGATCTGGGA 4497
Query 7800 TAGTAAAATCCTGGAACCCCATTGGTGTTTTAATGTTTGCACCAGGGTAAAGGTGCGAGG 7859
|| || || || || || | |||| | ||||| || | || || |||| | |
Sbjct 4496 CAGCGAACTCTTGAAAACCGACAGGTGCCTGGATGTTGGCGGCCGGATAGAGGTTCTTCG 4437
Query 7860 CAATGCCTCCGGTAATATGATCAAGCTCTACGCCGGTGA--TCTGACTCTTACCGCGCAC 7917
| || || ||||| || ||||| ||||| || ||||||| | ||| | | ||||||
Sbjct 4436 CGATACCACCGGTGATGTGATCGAGCTCCACCCCGGTGATGTTTGAACCCT--CGCGCAG 4379
Query 7918 ACCTGCCGGCATCATCCCTAAGAAATTACCAGTACCAACTGAAGGCTCAAGCAC 7971
| ||||||||| || | ||| || |||| ||| || || || ||||||||
Sbjct 4378 CGCGCCCGGCATCAAACCAAGGAAGTTGCCAGCACCGACCGACGGTTCAAGCAC 4325
Score = 91.5 bits (100), Expect = 4e-14
Identities = 199/298 (67%), Gaps = 0/298 (0%)
Strand=Plus/Minus
Query 6694 TGCCATAGCATCCTTGGCCGTTGTCGCTTTGGTGGGCGCATTATATGGTGACTGAGTGCG 6753
||||| ||||||||||||| || | || ||||||| | ||||| || |||||
Sbjct 5602 TGCCAATGCATCCTTGGCCGACGTTACGTTCGTGGGCGGGCTGTATGGCTCTTGCGTGCG 5543
Query 6754 CTTGTAGAATATCGCCGCCTTTTGGGCGCTTGGCTTGCGTGATTGCTCGCCGGTTTTCTT 6813
|||| ||| |||| || || | || ||| ||| | ||||||||| | ||
Sbjct 5542 CTTGGTGAAGATCGGGGCTTTGCGTGCCGACGGCGCGCGCGGGGTCTCGCCGGTCGTTTT 5483
Query 6814 CGCCATTGCTGGCGTAATTCCTTTATCGAATGATTCTTCAAGGGCTGCAATTTGCGGCCA 6873
|| || || | | || || ||||| ||||| || || | || ||||||||
Sbjct 5482 GGCAATGGCCGCGCTGATCCCACGTTCGAAACCATCTTCGAGCGCAGATATCTGCGGCCA 5423
Query 6874 GGTAGGATCATCACGGAACAACCGTTTATTGGCATCTGAGTTTATTGGCCCATGAGACTT 6933
||| ||||| || ||||||| ||||| ||||| || || || || ||||| || |||
Sbjct 5422 GGTCGGATCGTCGCGGAACAGACGTTTGTTGGCGTCGGAATTGATGGGCCCGTGTTTCTT 5363
Query 6934 AACAAACGCGTCATATTCACGATTAAGACGCGTGCGCAACGCGTCAAGTGCCGCATCT 6991
| || || || || | || |||||| |||||| ||| ||| |||||||
Sbjct 5362 TGCGAAGGCATCGTAGAAATCGTTGAGACGCTTGCGCAGGTTGTCCAGTTTCGCATCT 5305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123547257744960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |