Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq6427 161 2e-35 >seq6427 Length=47605 Score = 161 bits (178), Expect = 2e-35 Identities = 244/345 (71%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 11367 GCCATTGAATGGACTGACCACACGTTTAACCCCTGGGAGGGCTGCCAGAAGGTGGGACCC 11426 || ||||| ||| |||||||||||||| || |||||||| ||||||||||| || Sbjct 20130 GCGATTGAGTGGTGCGACCACACGTTTAATCCGTGGGAGGGATGCCAGAAGGTTTCGCCT 20071 Query 11427 GGGTGTGACAATTGCTATGCCGAGGCGCGCAATGCCCGTTTCGGTGGGGGCACGGCGCCA 11486 || || ||| |||| || |||||||||||||| || |||||||| || | ||| | Sbjct 20070 GGCTGCGACCATTGTTACGCCGAGGCGCGCAACCAGCGCTTCGGTGGCGGTATTGCGACG 20011 Query 11487 AACTGGGGACCAGGAGCCCCGCGCCGTCTCACCTCCAAGGCCAATTGGCGCGCACCGCTC 11546 || ||||||||||| || ||||| || || || ||||| ||| | ||||| | Sbjct 20010 AATTGGGGACCAGGCGCGCCGCGGCGCAAGACATCGCTCGCCAACTGGTTCAAACCGCGC 19951 Query 11547 AAATGGGCCAAGCGCGCGGCCGAA----TTCCAGGCAGAGCACGGACGGCGCCAGCGCGT 11602 | |||| |||||| | |||| ||| | | |||| || ||||||||||| Sbjct 19950 AGATGG---CAGCGCGAAG-CGAAGGCGTTCTTTTCGGCCAACGGCCGCCGCCAGCGCGT 19895 Query 11603 CTTTTGCGCCAGCCTGGCTGATGTGTTTGACAATGCCGTGGACCCGGCCTGGCGCGCTGA 11662 || || || |||| |||||||| ||||||||||| || ||| |||||| || || Sbjct 19894 TTTCTGTTCCTCATTGGCGGATGTGTTCGACAATGCCGTTGATCCGCTCTGGCGAGCAGA 19835 Query 11663 CCTATTCGAGCTCATCAGGCAGACCCCAGAGCTGGACTGGCTCCT 11707 | | || | |||||| | || || || || |||||||| || Sbjct 19834 ATTGTGGGAATTGATCAGGGACACGCCGGATCTCGACTGGCTGCT 19790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124522361606160