Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq15370 109 2e-19 >seq15370 Length=122281 Score = 109 bits (120), Expect = 2e-19 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 46038 CGCACATGGGATGTGGGTCACATAGAGGGTGCAGCCCTTGGTGCTG-ATTCCCTCACGGG 46096 |||||| || ||| ||||||||||||||||| || | ||| ||| || || | || | Sbjct 52230 CGCACACGGAGGGTGTGTCACATAGAGGGTGCACCCATCGGT-CTGAATGCCGGCCCGCG 52172 Query 46097 CGGCAAAGGCGATGACGTTCTGTTCGGCATGGCTGGCAAACAGATACTTCATGGGCCGCT 46156 | || || || | || |||||||| || |||||||| ||||| |||||| | || |||| Sbjct 52171 CAGCGAACGCCAGCACATTCTGTTCAGCGTGGCTGGCGAACAGGTACTTCTTTGGGCGCT 52112 Query 46157 CAAATCGCTCAGGGGTGTCATGGACGCCAACGGGTGGCCCATTGTATCCCGTGAGGCGGA 46216 | || ||| || || | |||||| | ||||| || ||| | || |||||||| | Sbjct 52111 CGCGTCTATCATCAGTCTCGTTGACGCCGATCGGTGGTCCGTTGAAGCCGGTGAGGCGCA 52052 Query 46217 CTTCGCCATCAGGTCCCAGCAGAACGGCCCCCACTTGGGTTTCATCCTTGGACCGTGTGG 46276 |||| | | || || | ||| | || || || || || ||||||||| ||| Sbjct 52051 CTTCCCGGTTCGGCCCGACCAGCGCAGCGCCGACCTGCGTGCTGTCCTTGGACTTCTTGG 51992 Query 46277 CCGC 46280 |||| Sbjct 51991 CCGC 51988 Score = 96.9 bits (106), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 6106 CATAGGGATTGCCGGTGTCTGGGTGGATGGACGGCGGCATTGCAACCTGCTTGCCGGTGC 6165 ||||||| |||||||||| || ||||| || || ||||| || |||||||||||||||| Sbjct 44681 CATAGGGCTTGCCGGTGTTCGGATGGATCGAGGGTGGCATCGCGACCTGCTTGCCGGTGC 44740 Query 6166 CGAAAAGTTCGATTTCCCAAGTCCAGTGCTTTTT 6199 ||||||| ||||| |||||| ||| |||||| Sbjct 44741 CGAAAAGCTCGATCTCCCAATCCCA---CTTTTT 44771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181976759932800