Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq70604 113 9e-20
seq75383 111 3e-19
seq42836 105 1e-17
seq25926 96.9 7e-15
seq69229 87.8 4e-12
>seq70604
Length=2882449
Score = 113 bits (124), Expect = 9e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || |||||
Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1789411
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || ||| |||| |||| ||| | ||||||||||| | ||| || || ||||| ||
Sbjct 1789412 CAAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1789471
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| ||| | ||| || | | ||
Sbjct 1789472 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGAC 1789531
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| ||||| || || |||| || || | || |||||||| ||
Sbjct 1789532 CTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582
>seq75383
Length=1910755
Score = 111 bits (122), Expect = 3e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || | ||| | |||||| ||| || || |||
Sbjct 169007 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 168948
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| ||||| || |||||||| || ||||| || || ||
Sbjct 168947 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGG 168888
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| |||||||| || || ||||| || | || || ||
Sbjct 168887 GGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCC 168828
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| |||||||||||||| | || || | ||| |||||||||
Sbjct 168827 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777
>seq42836
Length=1893264
Score = 105 bits (116), Expect = 1e-17
Identities = 165/232 (71%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
||||| | ||| | || |||||||| | ||| | ||| ||| || || || || |||||
Sbjct 1011611 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1011553
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| ||
Sbjct 1011552 CAAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1011493
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||| ||| | || || | || ||
Sbjct 1011492 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGAC 1011433
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTT 192539
| ||||| ||||| || || || || || || | ||| |||||||| ||
Sbjct 1011432 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381
>seq25926
Length=4460019
Score = 96.9 bits (106), Expect = 7e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || |||| | | ||| | ||| ||| || || || | ||||
Sbjct 2859469 ACCACCACCAAGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGA-ATGTTGCAGTCAG 2859527
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| |
Sbjct 2859528 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 2859587
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| | | | ||| || | || |
Sbjct 2859588 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGA 2859647
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || ||||| ||||| || | || | || || | || |||||||| ||
Sbjct 2859648 CCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699
>seq69229
Length=1436921
Score = 87.8 bits (96), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || | | |||| |||| ||| || ||||||||||
Sbjct 420479 CTTTTGA-ATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 420537
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | ||| || || ||||| | |||||||| ||||| || || || ||| ||||
Sbjct 420538 TCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTGCATTTA 420597
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
||| | ||| || | | || || ||||| ||||| || | || | || || || |
Sbjct 420598 CTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGA 420657
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 420658 AAATCTGCATCTT 420670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983504712582000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |