Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3292 89.7 2e-12 >seq3292 Length=7324000 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || |||| || ||||| ||||| Sbjct 4339756 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 4339815 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || || || Sbjct 4339816 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 4339874 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||||| || || | || ||| Sbjct 4339875 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATG 4339934 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 4339935 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 4339965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470359525496840