Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq14506 540 2e-149 seq25291 269 6e-68 >seq14506 Length=197000 Score = 540 bits (598), Expect = 2e-149 Identities = 421/502 (84%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 33614 TGCGCGAGTTCGGTATTTTCGATCAGGCCGGATCGATGATCGCCGTTGCTAAACCCGTCA 33673 ||||||||||||| |||||||||||||||||||||||||| || || || || || |||| Sbjct 136001 TGCGCGAGTTCGGCATTTTCGATCAGGCCGGATCGATGATAGCGGTCGCCAAGCCAGTCA 136060 Query 33674 GCCAGTACAAGCCGACCGCGCTCGAAGGCCAGCTTGAAGACATCCGTTACGAGTTCCAGA 33733 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 136061 GCCAGTACAAGCCGACTGCGCTTGAAGGTCAGCTTGAAGACATCCGTTACGAATTCCAGA 136120 Query 33734 TCATCATTGGCGAAAACGCCAATGTAACCTTGCTGGTCGATCCGTCCCTGTTGTTTGCCA 33793 |||||||||| || || |||||||| || ||||||| ||||| || ||| | ||||||| Sbjct 136121 TCATCATTGGTGAGAATGCCAATGTGACGCTGCTGGTTGATCCCTCACTGCTTTTTGCCA 136180 Query 33794 CGCGGGCTTGGGTCGAAAACCGCAAAATTCCGATGGGCCAGCTTATGCGCTTGCCGTGGC 33853 ||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||| ||| Sbjct 136181 CGCGGACTTGGGTCGAAAATCGCAAAATCCCGATGGGCCAGCTTATGCGCCTGCCATGGA 136240 Query 33854 TGCCTGTTCTTTCCATGACGCTCTCAAACGCTCCTGGAAATCCGGCCGTGGGCGACAGCT 33913 |||| ||||||||||| |||||||| | ||||| || |||||||| |||||||||| || Sbjct 136241 TGCCCGTTCTTTCCATCACGCTCTCCAGTGCTCCCGGCAATCCGGCTGTGGGCGACACCT 136300 Query 33914 ATCTCGTTCCTTCTAACGCCACCGGCATCTGGCTCGCAAATATCGGCAAAATTGCCGAAT 33973 | || |||||||||||||| || ||| ||||| | |||| ||| ||||||||||| | Sbjct 136301 ACCTTGTTCCTTCTAACGCTACGGGCGTCTGGACAACCAATACCGGGAAAATTGCCGAGT 136360 Query 33974 GGAACGGCACGAACTGGAACTACGTTTTGCCTCCCGATGGCCATGGCATCAGCTTACCAG 34033 |||||||| || |||||| || |||| ||| || ||||| |||||||||||||| |||| Sbjct 136361 GGAACGGCTCGGGCTGGAATTATGTTTCGCCCCCGGATGGTCATGGCATCAGCTTGCCAG 136420 Query 34034 ACGGCCGCATATTCGAGCGAATAGGTGGCACCTATGTCGAGAAGTTGGCGCTCGATGTAC 34093 | || ||| | |||||||| || | |||| |||| | || ||| ||||||| |||| | Sbjct 136421 ATGGTCGCGTGTTCGAGCGGATCGCTGGCTCCTACATTGAAAAGCTGGCGCTTGATGCCC 136480 Query 34094 AGTCTGGTAAGTGGAGCTACGC 34115 | || || || |||| |||||| Sbjct 136481 AATCGGGAAAATGGACCTACGC 136502 >seq25291 Length=77000 Score = 269 bits (298), Expect = 6e-68 Identities = 284/374 (76%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 35094 GGTTGGCTACTGAAGGGCAGCAAGTTCGAAGCGCCCGCTGTGGTGGTTCCGACGCTGGAT 35153 || ||||| ||||| |||| |||||||||| || ||||| |||||||| |||| || Sbjct 31635 GGCTGGCTGCTGAATGGCAATGAGTTCGAAGCCCCTGCTGTAGTGGTTCCTTCGCTTGAG 31694 Query 35154 GCGGTCAAGGCCAACCGTATTGAAACCCTGAGGGGCGCCTGTGAAGCAACGATCACAGGG 35213 ||| |||| ||| | |||||||| || || || |||||||||| ||||||||| Sbjct 31695 GCGATCAAAGCCGCTCACATTGAAACTCTACGGATAGCATGTGAAGCAAAGATCACAGGC 31754 Query 35214 GGCTTCCAGTCGAGTGCGCTTGGAAGCGATCATACTTATCCGAGCGACATCAAAGCCCAA 35273 |||||| || ||||| ||||| | | ||| || || |||||||||||||| || ||| Sbjct 31755 GGCTTCATCTCAAGTGCCCTTGGGGGGGCTCACACCTACCCGAGCGACATCAAGGCGCAA 31814 Query 35274 ATCAATTTGATGGGTTCTGTGACGGACAGCATCATGCCCGATCTCCCGCCCGACTGGCAA 35333 ||||| | ||||||||||| || ||||| |||||||| || || ||| | ||||| | Sbjct 31815 ATCAACCTAATGGGTTCTGTCACCGACAGTATCATGCCGGACCTTCCGGCAAACTGGACA 31874 Query 35334 ACGCCATTCTGGGTCTGTGATGTCGCCGGTTTGTGGAGCTGGAAAATGCACAACGCCACG 35393 || ||||| ||||||||||| | || || ||||| ||||| ||||| || ||| | Sbjct 31875 ACACCATTTTGGGTCTGTGACGCGGCTGGGCTGTGGGCTTGGAAGATGCATAATGCCGCT 31934 Query 35394 CAAATCCAGCAGGCCGGTCGAGACGGCAAGGCACATGTCGTAGTCTGCCAGACGACGCTC 35453 ||||||||||| ||||| ||||||||||| || ||| || | | |||||| | |||| Sbjct 31935 CAAATCCAGCAAGCCGGGCGAGACGGCAAAGCCGCTGTTGTGGCCGCCCAGACCAAGCTC 31994 Query 35454 GCCACACTCACGGC 35467 | | ||| ||||| Sbjct 31995 GGCCAACTGACGGC 32008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119378289105600