Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq12156 140 9e-29 >seq12156 Length=2201700 Score = 140 bits (154), Expect = 9e-29 Identities = 235/339 (69%), Gaps = 1/339 (0%) Strand=Plus/Plus Query 39098 AAATGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCC 39157 || || ||||||||| |||| ||||||| | ||||||| ||||| ||| | ||| Sbjct 143214 AACTGTAGTGGTCAAGTAAAATTGGCCACGGTTTTAGAGTCATTCCAATATAAACGTTCT 143273 Query 39158 GATTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCC 39217 || || ||||| | ||||||||| ||||||| || ||||| ||||||||||||| Sbjct 143274 GACTCATTTGGCGTTAACCCACCATTATATTGATGGGGTCTGGTCTCACTGTAATATCCA 143333 Query 39218 ACGATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGC 39277 ||| || | || || | | | |||| || | || | | ||||| | || Sbjct 143334 GTGATGTAATTTGTGATCTCTTTATCTGCTTCTGTAAAATTCCCATAACCACTGGCGGGT 143393 Query 39278 ATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTT 39337 ||||| || |||| ||| || ||||| || |||||||| ||||||||| || || Sbjct 143394 ATCCACTCAGATTTCAAACTTCTAAAGAAACGCTCCATTGGTGCGTTATCCCAACAATTC 143453 Query 39338 CCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCT 39397 ||||| || |||||||| || ||||| ||||| | ||| || | ||| | | Sbjct 143454 CCGCGACGACTCATACTTTGCTCAATCTGAAGACGCCATATTAATTG-TCTGAATTTCAA 143512 Query 39398 GCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC 39436 |||||| ||||| || ||||||||||| | ||||| Sbjct 143513 GCTCGTGTAATGTGAACCTTGATCGCTGTGATATATCAC 143551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132476651464080