Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq75383 123 2e-23 seq70604 113 4e-20 seq34609 109 5e-19 seq42836 105 6e-18 seq33366 93.3 4e-14 seq25926 91.5 1e-13 seq5714 89.7 5e-13 seq69229 86.0 6e-12 seq37082 86.0 6e-12 seq49734 84.2 2e-11 >seq75383 Length=1910755 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 169917 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169976 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 169977 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 170036 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 170037 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 170096 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| |||| ||| | ||||| Sbjct 170097 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 170144 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || |||||||| || || || || || || | Sbjct 168775 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCG 168834 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| ||||| |||||||| || || || || Sbjct 168835 AGTGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGAC 168894 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||||||||||||||||||| ||| | | | | |||| || || Sbjct 168895 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 168954 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 168955 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 168986 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 169005 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169064 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 169065 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169124 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 169125 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169184 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 169185 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169214 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 169233 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169292 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 169293 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169352 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 169353 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169412 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 169413 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169442 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 169461 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169520 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 169521 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169580 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 169581 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169640 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 169641 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169670 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 169689 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169748 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 169749 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169808 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 169809 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169868 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 169869 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169898 >seq70604 Length=2882449 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || ||||| || || || || || || || || | || | Sbjct 1789580 GATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCCTC 1789521 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 1789520 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 1789461 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || | || ||||| ||| | | |||| || || || Sbjct 1789460 GCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 1789401 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||||||| || || || || | |||||| || | || || |||| Sbjct 1789400 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCG 1789351 >seq34609 Length=2775773 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || || || || || || || || || || || | Sbjct 2545942 GATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCCTC 2545883 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 2545882 AGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 2545823 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||| || || || ||||| ||| | | |||| || || || Sbjct 2545822 GCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 2545763 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | | |||| || | || || || Sbjct 2545762 CATTCAAAAGGAGTCCACTCTTCATCTAGCGTTGAGACTTCGTGGTGG 2545715 >seq42836 Length=1893264 Score = 105 bits (116), Expect = 6e-18 Identities = 155/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTA-ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||||| ||| | || || || || || || || || || ||| | || || || Sbjct 1011383 GATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCT 1011442 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || ||| ||||| |||| |||||||| || || |||||||| ||||| || | Sbjct 1011443 CGGAAACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACC 1011502 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | |||||||||| ||||| || |||| ||| | | |||| || || | Sbjct 1011503 AGCAAAGACTGATCTTTGCTGGGAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTACA 1011562 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||||| || || || || || |||||| || Sbjct 1011563 ACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGA 1011600 >seq33366 Length=1752596 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || ||||| || || || || || || || || ||| Sbjct 779948 ATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 780007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 780008 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 780067 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 780068 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 780127 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || ||||| || ||| |||| Sbjct 780128 ATTCAGAAAGAGTCGACCCTGCACCTGGT 780156 >seq25926 Length=4460019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || | || || || || || || || || || | Sbjct 2859696 ATGCAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 2859637 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| ||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 2859636 GATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 2859577 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || ||||| ||| | | |||| || | ||| Sbjct 2859576 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAAC 2859517 Query 24884 ATTCAAAAGGAATCGACACT 24903 ||||||||||| || || || Sbjct 2859516 ATTCAAAAGGAGTCCACTCT 2859497 >seq5714 Length=4027443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || | || | || || | |||||| || || | Sbjct 697283 GATGCAGATTTTCATGAAGACCCTGACAAGGAAGTCCATCACTCCCGAAGTCAAACCCTC 697224 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| ||||||||||| ||| ||||||| ||||||||||| Sbjct 697223 AGATGCAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAAAAGGAATTCCTCCCGATCA 697164 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | ||||| |||| || || || |||| ||| Sbjct 697163 GCAAAGACTGATCCTTGCTGGCAAGCAATTGGAAGAT 697127 >seq69229 Length=1436921 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || | || || || || || || || | || | Sbjct 420668 GATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTCAAGCCCTC 420609 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||| || | ||| |||||||| || || |||||||| | ||| || || Sbjct 420608 GGATACAATAGTAAATGCAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCA 420549 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 420548 CCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 420489 Query 24883 CATTCAAAAGGA 24894 |||||||||||| Sbjct 420488 CATTCAAAAGGA 420477 >seq37082 Length=86608 Score = 86.0 bits (94), Expect = 6e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || | || || || ||||| || || || || ||| Sbjct 35420 GATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCAG 35361 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || | | || ||||||||| | || || || || || || || Sbjct 35360 TGACACCATTGAGAGTGTCAGAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACCA 35301 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 || ||| ||||||| |||| ||| |||||||||| | | | || ||||||| || | Sbjct 35300 GCAGCGTCTGATCTTCTCCGGCAAAGAGCTGGAGGA-TGGCCACACTCTGTCAGACTACA 35242 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 | || || || || || || || || ||| | | | |||| || ||| ||||| | Sbjct 35241 ATATCCAGAAAGAGTCCACCCTGCATCTGGCGCTTCCTCTGCGAGGCGGCATCACTGAAC 35182 Query 24942 C 24942 | Sbjct 35181 C 35181 >seq49734 Length=293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || | || || || | |||||||||| |||||| Sbjct 237 AAGATCCAAGACAAAGAGGGCATCCCCCTAGACCAGCAGAGGCTGATCTTTGCAGGGAAA 178 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | |||| || || ||||| || | || || || || | | Sbjct 177 CAGCTGGAAGATGGGCACACCCTGTCTGAATACAACATCCAGA--GAGTCCACTCTGCTC 120 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||| ||| | ||||| Sbjct 119 TTGGTCCTGCGCTTGAGGGGAGG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449462773969600