Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 123 2e-23
seq70604 113 4e-20
seq34609 109 5e-19
seq42836 105 6e-18
seq33366 93.3 4e-14
seq25926 91.5 1e-13
seq5714 89.7 5e-13
seq69229 86.0 6e-12
seq37082 86.0 6e-12
seq49734 84.2 2e-11
>seq75383
Length=1910755
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || | || || || || || || || || || || |||
Sbjct 169917 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169976
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||||||||||||||| || || || || || ||
Sbjct 169977 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 170036
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||||||||||||||||| ||| | | | | |||| || || ||
Sbjct 170037 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 170096
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| || || || ||| |||| |||| ||| | |||||
Sbjct 170097 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 170144
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| | || || || || |||||||| || || || || || || |
Sbjct 168775 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCG 168834
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||| ||||| |||||||| || || || ||
Sbjct 168835 AGTGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGAC 168894
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | |||||||||||||||||||||||||| ||| | | | | |||| || ||
Sbjct 168895 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 168954
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| || || || || || || ||| ||||
Sbjct 168955 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 168986
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || | || || || || || || || || || || |||
Sbjct 169005 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169064
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||||||||||||||| || || || || || ||
Sbjct 169065 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169124
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||||||||||||||||| ||| | | | | |||| || || ||
Sbjct 169125 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169184
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || ||||| || || || ||| ||||
Sbjct 169185 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169214
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || | || || || || || || || || || || |||
Sbjct 169233 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169292
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||||||||||||||| || || || || || ||
Sbjct 169293 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169352
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||||||||||||||||| ||| | | | | |||| || || ||
Sbjct 169353 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169412
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || ||||| || || || ||| ||||
Sbjct 169413 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169442
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || | || || || || || || || || || || |||
Sbjct 169461 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169520
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||||||||||||||| || || || || || ||
Sbjct 169521 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169580
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||||||||||||||||| ||| | | | | |||| || || ||
Sbjct 169581 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169640
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || ||||| || || || ||| ||||
Sbjct 169641 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169670
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || | || || || || || || || || || || |||
Sbjct 169689 GATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 169748
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||||||||||||||| || || || || || ||
Sbjct 169749 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169808
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||||||||||||||||| ||| | | | | |||| || || ||
Sbjct 169809 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169868
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || ||||| || || || ||| ||||
Sbjct 169869 CATCCAGAAGGAGTCCACTCTGCACCTGGT 169898
>seq70604
Length=2882449
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || ||||| || || || || || || || || | || |
Sbjct 1789580 GATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCCTC 1789521
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| ||||| |||||||| || || |||||||| ||||| || ||
Sbjct 1789520 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 1789461
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || | || ||||| ||| | | |||| || || ||
Sbjct 1789460 GCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 1789401
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
|||||||||||| || || || || | |||||| || | || || ||||
Sbjct 1789400 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCG 1789351
>seq34609
Length=2775773
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || || || || || || || || || || || || || || || || |
Sbjct 2545942 GATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCCTC 2545883
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| ||||| |||||||| || || |||||||| ||||| || ||
Sbjct 2545882 AGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 2545823
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||||| || || || ||||| ||| | | |||| || || ||
Sbjct 2545822 GCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 2545763
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||||| || || || || | | |||| || | || || ||
Sbjct 2545762 CATTCAAAAGGAGTCCACTCTTCATCTAGCGTTGAGACTTCGTGGTGG 2545715
>seq42836
Length=1893264
Score = 105 bits (116), Expect = 6e-18
Identities = 155/218 (71%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTA-ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761
||||||||| ||| | || || || || || || || || || ||| | || || ||
Sbjct 1011383 GATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCT 1011442
Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
| || ||| ||||| |||| |||||||| || || |||||||| ||||| || |
Sbjct 1011443 CGGAAACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACC 1011502
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| ||| | |||||||||| ||||| || |||| ||| | | |||| || || |
Sbjct 1011503 AGCAAAGACTGATCTTTGCTGGGAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTACA 1011562
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
||||||||||||| || || || || || |||||| ||
Sbjct 1011563 ACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGA 1011600
>seq33366
Length=1752596
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| || ||||| || || || || || || || || |||
Sbjct 779948 ATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 780007
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| || || ||||| || || || || ||
Sbjct 780008 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 780067
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | ||||||||||| || |||||||| ||| | | | || ||||| |||
Sbjct 780068 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 780127
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| || || ||||| || ||| ||||
Sbjct 780128 ATTCAGAAAGAGTCGACCCTGCACCTGGT 780156
>seq25926
Length=4460019
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || || | || || || || || || || || || |
Sbjct 2859696 ATGCAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 2859637
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| ||||| ||||| |||||||| || || |||||||| ||||| || ||
Sbjct 2859636 GATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 2859577
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | |||||||||| || || || ||||| ||| | | |||| || | |||
Sbjct 2859576 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAAC 2859517
Query 24884 ATTCAAAAGGAATCGACACT 24903
||||||||||| || || ||
Sbjct 2859516 ATTCAAAAGGAGTCCACTCT 2859497
>seq5714
Length=4027443
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || || || || || || | || | || || | |||||| || || |
Sbjct 697283 GATGCAGATTTTCATGAAGACCCTGACAAGGAAGTCCATCACTCCCGAAGTCAAACCCTC 697224
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || |||||| ||||| ||||||||||| ||| ||||||| |||||||||||
Sbjct 697223 AGATGCAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAAAAGGAATTCCTCCCGATCA 697164
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
||| | ||||| |||| || || || |||| |||
Sbjct 697163 GCAAAGACTGATCCTTGCTGGCAAGCAATTGGAAGAT 697127
>seq69229
Length=1436921
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || || || || || || | || || || || || || || | || |
Sbjct 420668 GATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTCAAGCCCTC 420609
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| ||| || | ||| |||||||| || || |||||||| | ||| || ||
Sbjct 420608 GGATACAATAGTAAATGCAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGACCA 420549
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || || || ||||| ||| | | |||| || || ||
Sbjct 420548 CCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 420489
Query 24883 CATTCAAAAGGA 24894
||||||||||||
Sbjct 420488 CATTCAAAAGGA 420477
>seq37082
Length=86608
Score = 86.0 bits (94), Expect = 6e-12
Identities = 165/241 (68%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || | || || || ||||| || || || || |||
Sbjct 35420 GATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCAG 35361
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || | | || ||||||||| | || || || || || || ||
Sbjct 35360 TGACACCATTGAGAGTGTCAGAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACCA 35301
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881
|| ||| ||||||| |||| ||| |||||||||| | | | || ||||||| || |
Sbjct 35300 GCAGCGTCTGATCTTCTCCGGCAAAGAGCTGGAGGA-TGGCCACACTCTGTCAGACTACA 35242
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941
| || || || || || || || || ||| | | | |||| || ||| ||||| |
Sbjct 35241 ATATCCAGAAAGAGTCCACCCTGCATCTGGCGCTTCCTCTGCGAGGCGGCATCACTGAAC 35182
Query 24942 C 24942
|
Sbjct 35181 C 35181
>seq49734
Length=293
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/143 (73%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||||||||||||||| || || || | || || || | |||||||||| ||||||
Sbjct 237 AAGATCCAAGACAAAGAGGGCATCCCCCTAGACCAGCAGAGGCTGATCTTTGCAGGGAAA 178
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||| | | | |||| || || ||||| || | || || || || | |
Sbjct 177 CAGCTGGAAGATGGGCACACCCTGTCTGAATACAACATCCAGA--GAGTCCACTCTGCTC 120
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||| ||| | |||||
Sbjct 119 TTGGTCCTGCGCTTGAGGGGAGG 97
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449462773969600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |