Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 161 6e-35
seq37082 127 1e-24
seq33366 105 4e-18
seq34609 102 5e-17
seq25926 100 2e-16
seq49734 89.7 3e-13
seq64345 87.8 1e-12
seq29245 82.4 5e-11
>seq75383
Length=1910755
Score = 161 bits (178), Expect = 6e-35
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||||||| | ||| ||||||||| ||||| ||||| ||
Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| |||| ||||| || || ||||| |||||||| | ||||||||| | ||
Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||| ||||| | || || |||||| | || | ||| ||| ||| ||
Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169965
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| |||||||| ||||| | |||||| || |||||||||||
Sbjct 169964 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| ||||
Sbjct 169217 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169158
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 169157 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169098
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 169097 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169038
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 169037 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| ||||
Sbjct 169445 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169386
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 169385 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169326
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 169325 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169266
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 169265 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| ||||
Sbjct 169673 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169614
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 169613 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169554
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 169553 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169494
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 169493 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| ||||
Sbjct 169901 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169842
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| |||||||| | ||||||||| | || | ||||| |||||
Sbjct 169841 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169782
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 169781 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169722
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| | |||||| || |||||||||||
Sbjct 169721 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
Score = 129 bits (142), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 168989 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 168930
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || ||||| ||||||| | ||||||||| | || | || || || ||
Sbjct 168929 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCT 168870
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||| || ||||| || || || | ||| | | ||| || || | || ||||
Sbjct 168869 TGTATCTTCACCTTGAC--ATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGG 168812
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || ||||||||||||||||||||||||||
Sbjct 168811 TTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 168778
>seq37082
Length=86608
Score = 127 bits (140), Expect = 1e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 34770 CCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCA 34829
|||| || | |||| ||| ||||| || || ||||| || || || | |||| ||||
Sbjct 35212 CCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCA 35271
Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889
| | || |||| ||||||||| || ||||||||| | || | ||||||| ||| | |
Sbjct 35272 GCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGA 35331
Query 34890 TTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949
|||| | |||| | || | ||| ||| |||||| |||| ||| |||||||| |
Sbjct 35332 TTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGC 35391
Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | |||||||| ||||||||||||||
Sbjct 35392 CCATCAGGGTCTTCACAAAGATCTGCAT 35419
>seq33366
Length=1752596
Score = 105 bits (116), Expect = 4e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||||||||| || || || || |||| ||||
Sbjct 780159 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 780100
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| ||||| ||||| || | |||||||| | || | || ||||| ||
Sbjct 780099 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 780040
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | ||| ||| ||| || || | ||| ||||
Sbjct 780039 TGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 779982
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || ||||| || || ||||| |||||
Sbjct 779981 TCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 779948
>seq34609
Length=2775773
Score = 102 bits (112), Expect = 5e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831
|| |||| ||| |||||| |||||||| ||||| || | | || |||| ||||||
Sbjct 2545736 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGT 2545795
Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891
||||| || | |||||||||| ||||||||| | || | || ||||| || | ||
Sbjct 2545796 TGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 2545855
Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951
|| || || | |||| | || || |||||| |||| || |||||||| ||
Sbjct 2545856 TTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCT 2545915
Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||| | || ||||||||
Sbjct 2545916 GTCAGGGTCTTCATGAAAATCTGCAT 2545941
>seq25926
Length=4460019
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| |||||||| |||| || | | || |||| ||||||||||| || || ||
Sbjct 2859505 CTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 2859564
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||||||| ||||||||| | || | || ||||| || | || || || ||
Sbjct 2859565 GATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 2859624
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | | || || |||||| |||| || |||||||| | ||| |||||||| ||
Sbjct 2859625 TTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCAC 2859684
Query 34966 AAAGATCTGCATG 34978
|| |||||||||
Sbjct 2859685 GAAAATCTGCATG 2859697
>seq49734
Length=293
Score = 89.7 bits (98), Expect = 3e-13
Identities = 141/199 (71%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||| | | | ||| ||| |||| ||||| || || ||
Sbjct 97 CCTCCCCTCAAGCGCAGGACCAAGAGCAGAGTGGACTC--TCTGGATGTTGTATTCAGAC 154
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| || || |||| ||||| || || || || |||||||| | ||||||||| | ||
Sbjct 155 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCTAGGGGG 214
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| ||||| | || || ||||| || || || | ||| ||| ||| |
Sbjct 215 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTTGATGGGGTCACTGGGCTCCA 272
Query 34929 CATCAACGGTTATGGTCTT 34947
| || | || ||||||||
Sbjct 273 CCTCCATGGGGATGGTCTT 291
>seq64345
Length=1225891
Score = 87.8 bits (96), Expect = 1e-12
Identities = 113/154 (73%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || | || ||||| ||||| | || ||||| |||| | |||||||||||
Sbjct 821636 TCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 821577
Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
||||| |||||| || || | | ||| ||| || ||| |||| ||| ||||
Sbjct 821576 CGGATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTAATGG 821519
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||| | |||||||| ||||||||||||||
Sbjct 821518 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 821485
>seq29245
Length=1237374
Score = 82.4 bits (90), Expect = 5e-11
Identities = 83/106 (78%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931
||||||||||| | ||||| |||||| || || || | ||| ||| |||||| |
Sbjct 846539 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATTGTGTCACTGGGCTCGACCT 846596
Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||| |||||||| ||||| | |||||| ||||||||||||||
Sbjct 846597 CAAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 846642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325385887461080
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