Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq75383 161 6e-35 seq37082 127 1e-24 seq33366 105 4e-18 seq34609 102 5e-17 seq25926 100 2e-16 seq49734 89.7 3e-13 seq64345 87.8 1e-12 seq29245 82.4 5e-11 >seq75383 Length=1910755 Score = 161 bits (178), Expect = 6e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| || || ||||| |||||||| | ||||||||| | || Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || |||||| | || | ||| ||| ||| || Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169965 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| ||||| | |||||| || ||||||||||| Sbjct 169964 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 169217 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169158 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| |||||||| | ||||||||| | || | ||||| ||||| Sbjct 169157 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169098 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 169097 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169038 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 169037 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 169445 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169386 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| |||||||| | ||||||||| | || | ||||| ||||| Sbjct 169385 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169326 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 169325 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169266 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 169265 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 169673 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169614 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| |||||||| | ||||||||| | || | ||||| ||||| Sbjct 169613 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169554 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 169553 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169494 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 169493 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 169901 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 169842 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| |||||||| | ||||||||| | || | ||||| ||||| Sbjct 169841 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 169782 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 169781 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169722 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 169721 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| |||| Sbjct 168989 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 168930 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| ||||||| | ||||||||| | || | || || || || Sbjct 168929 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCT 168870 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||| || ||||| || || || | ||| | | ||| || || | || |||| Sbjct 168869 TGTATCTTCACCTTGAC--ATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGG 168812 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || |||||||||||||||||||||||||| Sbjct 168811 TTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 168778 >seq37082 Length=86608 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34770 CCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCA 34829 |||| || | |||| ||| ||||| || || ||||| || || || | |||| |||| Sbjct 35212 CCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCA 35271 Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889 | | || |||| ||||||||| || ||||||||| | || | ||||||| ||| | | Sbjct 35272 GCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGA 35331 Query 34890 TTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949 |||| | |||| | || | ||| ||| |||||| |||| ||| |||||||| | Sbjct 35332 TTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGC 35391 Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | |||||||| |||||||||||||| Sbjct 35392 CCATCAGGGTCTTCACAAAGATCTGCAT 35419 >seq33366 Length=1752596 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||||||||| || || || || |||| |||| Sbjct 780159 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 780100 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| ||||| || | |||||||| | || | || ||||| || Sbjct 780099 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 780040 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | ||| ||| ||| || || | ||| |||| Sbjct 780039 TGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 779982 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||| || || ||||| ||||| Sbjct 779981 TCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 779948 >seq34609 Length=2775773 Score = 102 bits (112), Expect = 5e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 || |||| ||| |||||| |||||||| ||||| || | | || |||| |||||| Sbjct 2545736 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGT 2545795 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || | |||||||||| ||||||||| | || | || ||||| || | || Sbjct 2545796 TGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 2545855 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || || || | |||| | || || |||||| |||| || |||||||| || Sbjct 2545856 TTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCT 2545915 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| | || |||||||| Sbjct 2545916 GTCAGGGTCTTCATGAAAATCTGCAT 2545941 >seq25926 Length=4460019 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| |||| || | | || |||| ||||||||||| || || || Sbjct 2859505 CTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 2859564 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| ||||||||| | || | || ||||| || | || || || || Sbjct 2859565 GATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 2859624 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | | || || |||||| |||| || |||||||| | ||| |||||||| || Sbjct 2859625 TTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCAC 2859684 Query 34966 AAAGATCTGCATG 34978 || ||||||||| Sbjct 2859685 GAAAATCTGCATG 2859697 >seq49734 Length=293 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| | | | ||| ||| |||| ||||| || || || Sbjct 97 CCTCCCCTCAAGCGCAGGACCAAGAGCAGAGTGGACTC--TCTGGATGTTGTATTCAGAC 154 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| || || |||| ||||| || || || || |||||||| | ||||||||| | || Sbjct 155 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCTAGGGGG 214 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| ||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 215 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTTGATGGGGTCACTGGGCTCCA 272 Query 34929 CATCAACGGTTATGGTCTT 34947 | || | || |||||||| Sbjct 273 CCTCCATGGGGATGGTCTT 291 >seq64345 Length=1225891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || | || ||||| ||||| | || ||||| |||| | ||||||||||| Sbjct 821636 TCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 821577 Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 ||||| |||||| || || | | ||| ||| || ||| |||| ||| |||| Sbjct 821576 CGGATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTAATGG 821519 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| | |||||||| |||||||||||||| Sbjct 821518 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 821485 >seq29245 Length=1237374 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 846539 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATTGTGTCACTGGGCTCGACCT 846596 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| ||||| | |||||| |||||||||||||| Sbjct 846597 CAAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 846642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325385887461080