Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_023566.1 Length=56024 Score E Sequences producing significant alignments: (Bits) Value seq72559 84.2 8e-12 seq75672 80.6 1e-10 >seq72559 Length=385 Score = 84.2 bits (92), Expect = 8e-12 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 5827 GCGGGTACTGGCGCGTCTTCAACGACCAACGCCGCAGGTTATGCCATCGGTGCGACCGTC 5886 || || || || || || |||||||||||||| | |||||| || |||| | |||||| Sbjct 234 GCTGGAACGGGTGCCGCTGCAACGACCAACGCCACCGGTTATCCCGTCGGCACAACCGTC 293 Query 5887 ATCACACTGGCGTCTGCCGGCACTGGT---GTCATCAAGGCAGGTGATGTTATCACCTTT 5943 ||||| || || || ||||| || ||| || || || ||||| || || ||||| Sbjct 294 ATCACGCTTGCTTCGGCCGGTACCGGTGCGGTTATTCAG---GGTGACGTGATTACCTTC 350 Query 5944 GCCGGTGACGCCAACAAATAC 5964 |||||||| | ||||| ||| Sbjct 351 GCCGGTGATCCGAACAAGTAC 371 >seq75672 Length=926 Score = 80.6 bits (88), Expect = 1e-10 Identities = 200/304 (66%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 45701 CAGCACGTCAATGTGATTGACGGAGCGGGCGGGCGTCATCAATTGGGCGATGCTGAATTA 45760 ||||||||||| ||||| || || ||||| | || | ||||| | ||| Sbjct 381 CAGCACGTCAACGTGATCGAAGGTCATCATGGGCGCAAGGAACTAGGCGACACAACATTG 440 Query 45761 TCGGCTCCGTCGCTCGATTGGCTCAAATTCGGCATGTCGCTAATCGATCCTAACAACCTG 45820 || ||||||||||| ||||| |||| ||||| | || ||||| | | || Sbjct 441 CAAGCGCCGTCGCTCGAATGGCTTTCGTTCGCAATGTCATATGTTGACCCTAATACCTTG 500 Query 45821 GACCGTGGCGAGTGGATCAGCTTAACGGCTGCATTCAAGCAATCGGGTTGGCTTCATGCT 45880 ||| | || || ||| | | |||| || || || || || | |||||| ||||| Sbjct 501 GACAGGGGGGATTGGCTGTCCATAACAGCCGCCTTTAAACAGGCCGGTTGGAACCATGCG 560 Query 45881 GACGATCAGGCGTTGTTCAATATTTGGTCCGAATGGTGCGCGCGTTACGGTTCGAACGAT 45940 ||||| || | |||| || || ||||| | |||||||||| ||| || ||| Sbjct 561 GACGAACAAACACTGTTTAACATGTGGTCGCAGTGGTGCGCGCAATACAACGGCAATGAT 620 Query 45941 GTTGCCGAAAACCTGAAACAATGGAATTCGATCCGAGAAACAGAAGTTGGCTGGAAAGCA 46000 |||||| ||||||||| | ||||| || || | | ||| | |||||||| || Sbjct 621 CCTGCCGAGAACCTGAAAAACTGGAACAGCATTCGTAATAGTGAAATCGGCTGGAAGTCA 680 Query 46001 ATCC 46004 ||| Sbjct 681 TTCC 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 178990704174240