Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq15303 100 6e-17 >seq15303 Length=32000 Score = 100 bits (110), Expect = 6e-17 Identities = 301/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 26963 GACTGGGTCGGCTGGCTCTGGACGTGCTTTGGCACACACGGGATCGTGGCCCTCACATTC 27022 |||||| | | | ||| ||| |||||| ||| | | || | | || || || || Sbjct 31546 GACTGGCTGGCCAAGCTGTGGTTGTGCTTCGGCGAAAAGGGACTGGCTGCACTGACGTTT 31605 Query 27023 TGGTTCGGCTCGCTGTACGCCAATCAGATCCGTAG-CAGTCACAAGTCGTTCCCGTTCTT 27081 ||||| || || |||| | | | |||||| | |||| || | ||||||||| | Sbjct 31606 TGGTTTGGTTCACTGTTCTCAGAACAGATCAGGGCACAGTACGAAAGC-TTCCCGTTCCT 31664 Query 27082 GGAAGCCACGGGCGAGGCCGGCGCCGGCAAGACCACGCTGCTCAACTTCCTATGGAAGCT 27141 ||| ||||| ||||| | | ||| || |||||||| || | | ||||| ||||| || Sbjct 31665 GGAGGCCACTGGCGAACCAGACGCGGGTAAGACCACATTGATTATGTTCCTGTGGAAACT 31724 Query 27142 GCTCGCCCGCGCCGATCATGAAGGCTTTGACCCCGCCAAGTCCACGAAGGCCGGCCGCGC 27201 ||| || || | | |||||||| ||||| || || | | ||||| Sbjct 31725 CTTCGGGCGGCCCCACTACGAAGGCTTCGACCCAATGAAAGGTACTGCGTCAGGCCGTAG 31784 Query 27202 CCGCGCCATGGGGCAGATTTCCGGCATGCCCATTGTGCTGTTGGAAGCCGACCGCAGCGA 27261 || || ||||| ||| | | || ||||| | ||| | | |||| || ||| || Sbjct 31785 TCGTGCGATGGGCCAGGTCGCAGGGATGCCGGTCGTGTTTATTGAAGGGGATCGC---GA 31841 Query 27262 CAACGGGGACAAGGCGCACGCCAAATCGTTCGAGTGGGACGAACTGAAGGACTACTACGG 27321 ||||| | || || | |||||||||||| | |||| |||| |||| || ||| Sbjct 31842 CAACGACG-CAT--CGAATAACAAATCGTTCGATATGAACGAGTTGAAAGACTTCTTCGG 31898 Query 27322 CGGCGGCACCCTCGCCACGCGCGGTGTGCGCAACGGCGGCAACGAAACCTACGAGCCGCC 27381 |||||| || | || || |||||| ||| | ||| |||||||| ||||| Sbjct 31899 TGGCGGCCTACTGGGTACCCGTGGTGTGAAAAACAACACCAATGAAACCTATGAGCCTGA 31958 Query 27382 GTTCCAGGGAACCATCGTCATCAGCCAGAACGCGCCTGT 27420 ||||| | | | |||| ||| |||| ||||| || || Sbjct 31959 GTTCCGCGCAGCAATCGCAATCTGCCAAAACGCTCCCGT 31997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107060009836080