Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq4033 150 2e-31 >seq4033 Length=1341 Score = 150 bits (166), Expect = 2e-31 Identities = 511/785 (65%), Gaps = 31/785 (4%) Strand=Plus/Minus Query 26015 GCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACAAAT 26074 || || ||||| ||||| || || || | ||| ||| || || || | || ||||| Sbjct 1082 GCGATTTCTTCAAGGCACGCTACTTTTAAACCCTGTACATTTTCAATCGTCTGTACAAAC 1023 Query 26075 TGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTTCCT 26134 |||||||| |||||||||||| ||||| ||||| ||||| | || || | ||| Sbjct 1022 GATGATGCTTCATGAAGACTTTCATGCGTTCCCGTATCAAGCCATGCAAAGCCACGCCCT 963 Query 26135 AGTT-TACAGACACGTAAAGTCTTT---TCTTTCCAGTACATCTCATTTATATCCGTAAT 26190 | | | || |||| || ||| || || ||||||||||||||| || || Sbjct 962 AATAATTCA---ACGTTGAG-CTTACCATCATTTAAGTACATCTCATTTAACGTAGTTAT 907 Query 26191 CTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAATTATC 26250 || | ||| || | | || ||||| || || ||| | | ||| |||||| Sbjct 906 TTCAAGCTCTCCACGATGTGATGGTTTTACCTGTTTCGCTAATTCGACTACACGATTATC 847 Query 26251 GTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCAAT 26310 ||||| || || ||||| | ||| || || |||||| ||| |||||| ||||| || Sbjct 846 ATAAAAATATAACCCTGTAACTGCATAATTAGACTTTGGTTTTTCTGGTTTCTCTTCGAT 787 Query 26311 ACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCATTTAC 26370 | || | || || || |||||||||||||| | || || || || || Sbjct 786 TGAAATTGCTTTCATGTCTTTGTCGAATTCAACAACACCAAAACGCTCTGGGTCTTTCAC 727 Query 26371 GTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCAGAATCTAA 26430 ||||| ||||| | | || || ||||| | || |||| | | Sbjct 726 TTGATAACCAAATACCGTTGCCCCCG-----TTTTCC-----TACTC--GCAGCACTTTT 679 Query 26431 AATGCTA---CCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACAGA 26487 || | | | ||| |||||| | | | |||||| || ||||| | ||| Sbjct 678 AAGGGTTTTGCTAAATGATTGACCATAATAAATATTATCGCCAAGCACTAAGCAGACATT 619 Query 26488 ATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATC 26547 || | ||||||||| || |||||||| ||||| || | || || || | || | Sbjct 618 GTCGTTACCAATAAACTTTTCACCAATTATAAATGCCTGCGCCAATCCATCCGGCGAAGG 559 Query 26548 CTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTA--GAAGATTTACA 26605 ||||||||||| | | || || || | ||||| ||||| || |||| | Sbjct 558 TTGTATTGCATAACTCAAGTTTATGCCGTAATCACTACCATTACCTAACAAACGTTTAAA 499 Query 26606 AAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATT 26665 || || |||||| ||||| || ||||||| ||| || | |||||| | |||||| Sbjct 498 GCTTTCGTT--ATCTTCCGGTGTCGTGATTATTAATATATCGCGAATTCCCGCTAGCATT 441 Query 26666 AGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTG-TTTACT 26724 | ||| | ||| ||||| | ||| || |||||||| | ||| | |||||| ||| | Sbjct 440 AATGTAGATATTGGGTAATACACCATCGGCTTATCGTATACTGGGAGTAGTTGCTTTGAT 381 Query 26725 A-ACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTT 26783 | ||| | | |||| ||||||||| | || ||| ||| || ||||| ||||| |||| Sbjct 380 ACACCACGT--GTAAGTGGGTAAAGACGAGTGCCAGAACCTCCAGCTAATATAATTCCTT 323 Query 26784 TCATA 26788 ||||| Sbjct 322 TCATA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474970896518400