Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq41852 403 6e-108 seq74126 262 1e-65 seq40494 141 3e-29 seq25291 86.0 2e-12 >seq41852 Length=853088 Score = 403 bits (446), Expect = 6e-108 Identities = 669/963 (69%), Gaps = 35/963 (4%) Strand=Plus/Minus Query 16168 GCCGCGCTGCTGCTCAATAACCGATTTCGCAACGTCGTTCAGCACTACCAAGCGCTCATC 16227 |||||| |||| ||| || || || || || || ||||||| || || | || || || Sbjct 498856 GCCGCGTTGCTTCTCGATGACTGACTTGGCTACCCCGTTCAGAACGACAAGACGATCCTC 498797 Query 16228 CCGGTTCTTCACACCGGACTTCGCGCTTCGGCCGCCAAACCCAGCTGGAATCAGGAATAC 16287 | ||| ||||| || || | | | ||| |||||| | || ||||||||||| || || Sbjct 498796 GCCGTTTTTCACGCCTGAAGTTTCCCGTCGCCCGCCACAGCCTGCTGGAATCAGAAACAC 498737 Query 16288 GCTTGTTCCCAGCTCCGGCACCGCAATCTCCCAATCCCATTGCAGCTTACAAACCTCCTG 16347 ||| || | ||||| ||||| ||| ||||||||||| ||||||| || ||||| || Sbjct 498736 GCTGGTATCGAGCTCGGGCACGCAAATTTCCCAATCCCAACGCAGCTTGCAGACCTCTTG 498677 Query 16348 CTCGCGGCAACCGGTGTTCACCTTGAACATCGCCAT-CGTCTGCAGGTGGGCCGGCAACT 16406 ||| || || |||||||||||||||||||| ||||| ||| |||| ||| ||||||| || Sbjct 498676 CTCACGACAGCCGGTGTTCACCTTGAACATGGCCATACGT-TGCAAGTGAGCCGGCAGCT 498618 Query 16407 CGGCGAACAGAATCGATTGCTCCTCCCACGACAGTGGGTAGGGCTTGCGGCAGTTCGTCT 16466 | || |||| || ||||||||| ||||| || || ||||||||||| |||| ||| |||| Sbjct 498617 CTGCAAACAAAACCGATTGCTCTTCCCAAGAAAGCGGGTAGGGCTTTCGGCTGTTTGTCT 498558 Query 16467 TTTCGTCCAGCAAGGAGATCATCGGCACCACGTCAAGCCACGGACGCCGCTCCTCATCCC 16526 | || |||| || | ||||||||||||| || ||||| || ||| ||| |||||| Sbjct 498557 TCTCATCCAACATGCTGATCATCGGCACCTACTCCAGCCATGGCCGCTTCTCAGCATCCC 498498 Query 16527 GCCACTTCCTTGCGCACAAGTTCAAAACCCGAATGACGCGTTGCAGTGCGATATTCACAG 16586 ||||||| | |||||| | ||||||| || | ||| |||||||| ||||| || | | Sbjct 498497 GCCACTTGCGTGCGCATAGATTCAAAATCCTGACGACACGTTGCAGGGCGATGTTGATTG 498438 Query 16587 TTCTGTTCGTGA--CCGG-------CTTTCCATTCT---CCGGCTCAAGC-TTCGACCGT 16633 | ||||||| | |||| ||| || ||| | || | || || | | || Sbjct 498437 TCCTGTTCGATACGCCGGGCTTAACCTTGCCGGTCTTTGTCAGCCCCGGCGTTTGCCTGT 498378 Query 16634 -----ATATAGGGTGCCAGCGCGTCATCGTCCACATGAGTGATTGGCATGTGCCCGATAA 16688 || | | ||||| || | || || || || || || |||| | |||| Sbjct 498377 CCTTGATGAACTGCGCCAGTGCTCCGTCATCGACGTGGGTTATGGGCAGTTCACCGAGGT 498318 Query 16689 ACGGATCAAGCTGTGACATGTAAGTGGCTGAAATATGGATCGAAGGCTGATTTCTCACTT 16748 | |||||||||||| |||| | || || | | || || ||||| | || Sbjct 498317 AAGGATCAAGCTGTTCAATGTGCGATGCAGACAAAGCAATTGATGGCTGGTCGTGATATT 498258 Query 16749 CCATCAGGAAGCGGATAGAGGCCTCTCTCCACGTCCGAACCTGACGCACGCCGTACACCT 16808 ||| || || ||| | | |||||| | ||| || || ||||||||||||||||| ||| Sbjct 498257 CCACCAAAAAACGGGTGGCGGCCTCGCGCCAGGTTCGTACCTGACGCACGCCGTAAACCG 498198 Query 16809 TCCGCTGCCGCAGCTTTTCCAGCATGTGGATCAGGTACTGCTCGGCTTCCGCCCGGTCAC 16868 || ||| | || || || ||| | |||||||||||||||| ||| ||| || | Sbjct 498197 TCTCCTGTCTGAGTTTATCAAGCCGGAAAATCAGGTACTGCTCGGTTTCTTCCCTTTCGC 498138 Query 16869 AAGTGCCAGTACTTTCTTGAATTCGTTCTCCTCGGTATTTTTTGTCGATTTTCCAGATGC 16928 || || || |||||||||| |||| || ||| |||||||| | |||||| | Sbjct 498137 TTGTTCCTGTGCTTTCTTGAAGTCGTGTACCACGGACGACCTTGTCGATGTGCCAGATAC 498078 Query 16929 CGTTCGGCATTTTCTGGAGGCCGGTGATTGCTTTTTGGGCCATGCCGTTACTCCTGTGGC 16988 |||| | | | | |||||| | ||| | |||| | ||||| ||| || | | Sbjct 498077 CGTT---CCTCTCGTAGAGGCCTGAGATCGTTTTTCGCGCCATTGTGTTTCTTCCG---- 498025 Query 16989 CCCGGCATGGCGCTCGCTGCGGGGCTGATTGTTGTCCTGATTGGCTGCCTTTTCAATCGC 17048 ||||| | |||| ||| ||||||||||||| | ||| ||||||| || Sbjct 498024 --------GGCGCCCACTGCTAGGCGGATTGTTGTCCTGTAGCGGTGCTTTTTCAACCGA 497973 Query 17049 CTTGCTCTCGACGTAGGCATCCGCCCACGCGTCGAGCTCCAGCCGATCAAAGCCGACGCC 17108 ||| ||| || |||| || ||||| |||||||| | ||| || || ||||| Sbjct 497972 TTTGGTCTTGATGTAGTTGTCTGCCCATTGATCGAGCTCATATCTATCGAACCCAACGCC 497913 Query 17109 TTG 17111 ||| Sbjct 497912 TTG 497910 >seq74126 Length=69924 Score = 262 bits (290), Expect = 1e-65 Identities = 402/573 (70%), Gaps = 0/573 (0%) Strand=Plus/Plus Query 1461 GCCGCAGGCATCGCAGGACCACTCGCAGCTGCGTTTAGCGCAAAGGCTTTCTATGACGCC 1520 ||||| || || || || || | || ||||| | |||| |||| | || ||| Sbjct 24240 GCCGCCGGTATTGCCGGGCCGTTGGCTGCTGCCCTGAGCGTCAAGGGCGTGTACGACATG 24299 Query 1521 GCTGAGGCATACAGCACCCTTACAAACCGTATGAAGCTGGTCACCGATGGCGCTGGAGAG 1580 | ||||| || |||| || ||||||||| ||||||| || ||| |||| | | ||| Sbjct 24300 ACAGAGGCCTATGGCACTCTGACAAACCGTCTGAAGCTTGTGACCAATGGTTCAGCCGAG 24359 Query 1581 CTTGCAGCTGCTCAAAAGGCAGTATTCGCAATTTCCCAAAGCTCATACCAGCCACTGAAC 1640 || |||| |||||| || || ||| || | ||| || |||||| || Sbjct 24360 CTGACAGCGGCTCAAGCAGCGGTGTTCAACATCGCTCAAGCATCGGCCCAGCCGTTGGCT 24419 Query 1641 GCAACAGCAGAGCTTTACCAGCGGATCGCGACCAATCAGAAAGAGCTGAAACTGACGGGC 1700 | || ||||||||||| ||||| || || ||||| || | | ||| ||||| |||| Sbjct 24420 TCGACCGCAGAGCTTTATCAGCGCATTGCCACCAACCAAGAGGCGCTAAAACTATCGGGT 24479 Query 1701 GAGGGAGTGGCAGGAGTAGTCGGAACTATCAGCAAGACCCTGGCTATCTCTGGAGCTTCA 1760 ||||| ||||| || || || || || ||||| || || ||||| | || || || || Sbjct 24480 GAGGGTGTGGCGGGTGTCGTTGGCACCATCAGTAAAACGCTGGCGGTGTCCGGTGCGTCC 24539 Query 1761 GCTGCATCCGCTAACGCAGCGCTGATCCAGCTTGGCCAAGCGTTTGCTTCTGGAACTTTG 1820 |||| | || ||||| || |||| ||| | || || || ||||| || || || Sbjct 24540 GCTGAAAGTGCCAACGCTGCCTTGATTCAGTTGGGGCAGGCCTTTGCCTCGGGTGTGCTG 24599 Query 1821 CGTGGCGAAGAGCTGAACAGCGTCATGGAGCAGGCTCCTGCATTGGCCCAGGCAATTGCG 1880 ||||| ||||| |||||| ||| ||||||||||| |||||| | |||||||| |||||| Sbjct 24600 CGTGGTGAAGAACTGAACTCCGTTATGGAGCAGGCGCCTGCACTTGCCCAGGCCATTGCG 24659 Query 1881 GCTGGCATGGGCAAGACAGTTGGAGAGCTGCGCACCCTTGGCGCTGCCGGACTTCTGACT 1940 || ||||||||||| || ||||| || |||||| | | ||||| || || ||||| Sbjct 24660 GCGGGCATGGGCAAAACCGTTGGCGAACTGCGCTCAATGGGCGCGGCTGGCGAACTGACC 24719 Query 1941 GCCGACTCTGTTGTGAAAGCATTGCAAGCGCAGCGCATAGCAGTCGATCAGCTGTTCGAT 2000 ||| | | || || ||||| ||||| ||| | ||||||||| || ||||| Sbjct 24720 GCCCAGGCAGTGGTTAAAGCCCTGCAAAGTCAGGTCGGCGCAGTCGATGCACTTTTCGAC 24779 Query 2001 AAGACGGCGGTAACGATCGGCCAAAGCATCACC 2033 || |||||| || |||||| | ||| ||||| Sbjct 24780 AAAACGGCGACCACTATCGGCAACAGCTTCACC 24812 >seq40494 Length=1808469 Score = 141 bits (156), Expect = 3e-29 Identities = 151/199 (76%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 12954 ATGCCGATCACCGCGCAGCAACTACTGCAGATCCTCCCGAACGCCGGCCAGAGAGCCGGC 13013 ||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1216021 ATGCCCATCACCACGCAGCAACTGCTGCAGATCCTCCCGAACGCCGGCCAAGTTGCCGGC 1216080 Query 13014 GTTTTTGCACCCGTTCTCAATACGGCGATGAGCAAGTACCAGATCGTGACACCGCT---- 13069 ||||| ||||| || | || || || |||| | ||| || ||||| | ||| Sbjct 1216081 GTTTTAGCACCTGTCTTGAACACTGCCATGAACCGGTATCAAATCGT----CGGCTTGAA 1216136 Query 13070 GCGCATCGCGGCATTCATTGCCCAGGTCGGTCATGAATCCGGCCAACTGCGCTACGTGCG 13129 ||| || ||||| ||||| ||||| ||||||||||||| ||||| || ||||| Sbjct 1216137 GCGTATTGCGGCCTTCATCGCCCAAATCGGTCATGAATCGGGCCAGCTCAAATACGTCAA 1216196 Query 13130 TGAGATATGGGGGCCGACC 13148 ||| | |||||||| ||| Sbjct 1216197 AGAGGTCTGGGGGCCTACC 1216215 >seq25291 Length=77000 Score = 86.0 bits (94), Expect = 2e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 23057 GCGTAGCTGTCGCCCATGTTTACCCAGATCGTGCCG-TCAGCGCGGAGCACCCGGCGCAC 23115 ||||||| |||||| ||| |||||| ||||||| || || | || | |||||||| Sbjct 1891 GCGTAGCAGTCGCCATAGTTCACCCAGCACGTGCCGGTCGGCTTG-AGGATGCGGCGCAC 1833 Query 23116 TTCGCGGAACACGTCGACCA--ACCGAGCGATGAACTCGGCAGGTGTTTCCTCAAGGCCG 23173 || ||| || |||||| ||| |||| ||||||| | || |||||| ||| Sbjct 1832 CTCTTCGAAGACAGCGACCATGACCTGAAGATG--CTCGGCAAGCGTAGGCTCAAGACCG 1775 Query 23174 ATCTGGCCTTCTACGCCATAGTCACGCAGGCCGTAGTAGGGCGGGCTGGTCACGCACGTA 23233 |||||||| || |||||||| || |||| || | || ||||| ||||| |||| | Sbjct 1774 ATCTGGCCGTCGACGCCATAATCGCGCAAACCCCAATACGGCGGCGATGTCAC-CACGCA 1716 Query 23234 -TGCACGCTTTCATCTGGCAGCGTGCGCATCATGTCGATGCAGTCGCCTAC 23283 | || | |||||| | |||||||| ||||||||||| || || Sbjct 1715 GTCAACTGAGTTTGCTGGCATAGAGCGCATCACTTCGATGCAGTCACCAAC 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163216401055680