Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq34609 145 1e-29 seq75383 141 2e-28 seq33366 141 2e-28 seq70604 138 2e-27 seq42836 136 8e-27 seq25926 136 8e-27 seq69229 122 2e-22 seq5714 114 3e-20 seq61258 111 3e-19 seq64865 109 1e-18 seq76267 104 5e-17 >seq34609 Length=2775773 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | || ||||| ||||| Sbjct 2545739 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 2545798 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||| ||||||| |||||||| || || ||||| |||||||||||||| || ||||| Sbjct 2545799 TTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2545858 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| || || || || | ||| || ||||| |||||| Sbjct 2545859 GCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCTGTC 2545918 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| | || |||||||| Sbjct 2545919 AGGGTCTTCATGAAAATCTGCAT 2545941 >seq75383 Length=1910755 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||||||||| || |||||||| || || || ||||| Sbjct 169004 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 168945 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || || ||||| || Sbjct 168944 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 168885 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| | || ||||| || || || ||| | || || || Sbjct 168884 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACC 168825 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || || || || || | ||||||||||| ||||||||| Sbjct 168824 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777 >seq33366 Length=1752596 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || || || ||| | || || || Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| || || || || || |||||| Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATT 779947 >seq70604 Length=2882449 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 1789371 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1789430 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| | ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 1789431 AGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1789490 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || | || || | ||| || ||||| Sbjct 1789491 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGGTCTTC 1789550 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| || || |||||||| Sbjct 1789551 CCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579 >seq42836 Length=1893264 Score = 136 bits (150), Expect = 8e-27 Identities = 157/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 1011593 ACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1011534 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 1011533 ACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1011474 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | |||||| ||| || || || || || || | | ||| || ||||| Sbjct 1011473 ATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGATGGTCTTC 1011414 Query 82782 CCTGTCAA-CGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| |||||||| Sbjct 1011413 CCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384 >seq25926 Length=4460019 Score = 136 bits (150), Expect = 8e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || || || || || | ||||| | | | | || ||||| ||||| || Sbjct 2859497 AGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTG 2859556 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| || Sbjct 2859557 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 2859616 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| | ||||| || || || || | ||| || ||||| | |||| Sbjct 2859617 TTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGG 2859676 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 2859677 GTCTTCACGAAAATCTGCAT 2859696 >seq69229 Length=1436921 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || || ||||| | | | | || ||||| ||||| || Sbjct 420468 AGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 420527 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||| | |||||||||||||| || ||||| || Sbjct 420528 CCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCC 420587 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||| ||||| | || ||||| || | || || | ||| || ||||| |||||| Sbjct 420588 TTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGG 420647 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| Sbjct 420648 GTCTTCATGAAAATCTGCAT 420667 >seq5714 Length=4027443 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | ||| || ||||||| ||| |||||||| ||||| ||||| ||||||| Sbjct 697125 CCATCTTCCAATTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 697184 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || | ||| |||| ||||| ||| Sbjct 697185 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 697244 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| | ||||| ||||| | || |||||||| Sbjct 697245 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCAT 697282 >seq61258 Length=1460494 Score = 111 bits (122), Expect = 3e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| |||||||| ||||||| ||| |||||||| || || ||||| | |||||| Sbjct 487625 CCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 487566 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || || || || ||||||||||| || ||||| || | || | | || Sbjct 487565 TTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 487506 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || |||| ||||||| ||||| || || |||||||| || Sbjct 487505 ATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCAT 487465 >seq64865 Length=1526523 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | || |||| ||||| Sbjct 730094 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGTTGC 730153 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| || || ||||| |||||||||| | || | ||| Sbjct 730154 TTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACCTTG 730213 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||||||||| || | ||| || || || || ||| || ||||| || || Sbjct 730214 ACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTCATGGTCTTCCCCATC 730273 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 730274 AGGGTCTTCACGAAAATCTGCAT 730296 >seq76267 Length=784369 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 740863 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 740922 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | ||||| |||||||| | ||| ||||| || || Sbjct 740923 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 740982 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| ||||| || Sbjct 740983 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 741017 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||| ||||| ||| |||||||||| |||||||| |||||||| | || |||| Sbjct 742168 AAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATG 742227 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | || || | || || | || | || ||| | ||||||||||| || || || | Sbjct 742228 GGTTAGCTGCCTTCGGCCCGTGGATTCAGAAATATCTCTGGTGGAAGCGATACCTGACCA 742287 Query 60429 TAATGCA 60435 | |||| Sbjct 742288 TGCTGCA 742294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980854540611480