Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq34609 145 1e-29
seq75383 141 2e-28
seq33366 141 2e-28
seq70604 138 2e-27
seq42836 136 8e-27
seq25926 136 8e-27
seq69229 122 2e-22
seq5714 114 3e-20
seq61258 111 3e-19
seq64865 109 1e-18
seq76267 104 5e-17
>seq34609
Length=2775773
Score = 145 bits (160), Expect = 1e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || || ||||| | | | | || ||||| |||||
Sbjct 2545739 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 2545798
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||| ||||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct 2545799 TTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2545858
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || ||||| || || || || | ||| || ||||| ||||||
Sbjct 2545859 GCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCTGTC 2545918
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| | || ||||||||
Sbjct 2545919 AGGGTCTTCATGAAAATCTGCAT 2545941
>seq75383
Length=1910755
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||| | || || || | ||||||||| || |||||||| || || || |||||
Sbjct 169004 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 168945
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || ||||| || |||||||| | || || || ||||| ||
Sbjct 168944 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 168885
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || ||||| ||||| | || ||||| || || || ||| | || || ||
Sbjct 168884 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACC 168825
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||| || || || || || | ||||||||||| |||||||||
Sbjct 168824 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777
>seq33366
Length=1752596
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | ||| || || | |||||| || || |||||||| || || ||||||||
Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || || |||||||| || || || || || || ||
Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || ||||| || || || ||| | || || ||
Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| || || |||||||| |||| || || || || || ||||||
Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATT 779947
>seq70604
Length=2882449
Score = 138 bits (152), Expect = 2e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || ||||| | | | | || |||||
Sbjct 1789371 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1789430
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| | ||||||||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 1789431 AGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1789490
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| || ||||||||||| || ||||| || | || || | ||| || |||||
Sbjct 1789491 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGGTCTTC 1789550
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | ||||| || || ||||||||
Sbjct 1789551 CCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579
>seq42836
Length=1893264
Score = 136 bits (150), Expect = 8e-27
Identities = 157/210 (75%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
||||| || ||||| || || || || || || || ||||| | | | | || |||||
Sbjct 1011593 ACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1011534
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
| ||| || ||||||||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 1011533 ACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1011474
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| | |||||| ||| || || || || || || | | ||| || |||||
Sbjct 1011473 ATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGATGGTCTTC 1011414
Query 82782 CCTGTCAA-CGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||| ||||||||
Sbjct 1011413 CCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384
>seq25926
Length=4460019
Score = 136 bits (150), Expect = 8e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| || || || || || || | ||||| | | | | || ||||| ||||| ||
Sbjct 2859497 AGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTG 2859556
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| ||
Sbjct 2859557 CCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 2859616
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| | ||||| || || || || | ||| || ||||| | ||||
Sbjct 2859617 TTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGG 2859676
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||| || || ||||||||
Sbjct 2859677 GTCTTCACGAAAATCTGCAT 2859696
>seq69229
Length=1436921
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| | || || || || || || ||||| | | | | || ||||| ||||| ||
Sbjct 420468 AGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTG 420527
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| || || ||| | |||||||||||||| || ||||| ||
Sbjct 420528 CCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCC 420587
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||| ||||| | || ||||| || | || || | ||| || ||||| ||||||
Sbjct 420588 TTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGG 420647
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||| | || ||||||||
Sbjct 420648 GTCTTCATGAAAATCTGCAT 420667
>seq5714
Length=4027443
Score = 114 bits (126), Expect = 3e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| | ||| || ||||||| ||| |||||||| ||||| ||||| |||||||
Sbjct 697125 CCATCTTCCAATTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 697184
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|||||||| ||||| || ||||||||||| || | ||| |||| ||||| |||
Sbjct 697185 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 697244
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| | ||||| ||||| | || ||||||||
Sbjct 697245 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCAT 697282
>seq61258
Length=1460494
Score = 111 bits (122), Expect = 3e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| |||||||| ||||||| ||| |||||||| || || ||||| | ||||||
Sbjct 487625 CCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 487566
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| || || || || ||||||||||| || ||||| || | || | | ||
Sbjct 487565 TTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 487506
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
|| |||| ||||||| ||||| || || |||||||| ||
Sbjct 487505 ATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCAT 487465
>seq64865
Length=1526523
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || || ||||| | | | | || |||| |||||
Sbjct 730094 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGTTGC 730153
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| |||||||| || || ||||| |||||||||| | || | |||
Sbjct 730154 TTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACCTTG 730213
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| ||||||||||| || | ||| || || || || ||| || ||||| || ||
Sbjct 730214 ACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTCATGGTCTTCCCCATC 730273
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 730274 AGGGTCTTCACGAAAATCTGCAT 730296
>seq76267
Length=784369
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||||||| || || || || || ||||||||||| || || |||
Sbjct 740863 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 740922
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || ||| | ||||| |||||||| | ||| ||||| || ||
Sbjct 740923 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 740982
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| |||| ||||| ||
Sbjct 740983 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 741017
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||||||||| ||||| ||| |||||||||| |||||||| |||||||| | || ||||
Sbjct 742168 AAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATG 742227
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| | || || | || || | || | || ||| | ||||||||||| || || || |
Sbjct 742228 GGTTAGCTGCCTTCGGCCCGTGGATTCAGAAATATCTCTGGTGGAAGCGATACCTGACCA 742287
Query 60429 TAATGCA 60435
| ||||
Sbjct 742288 TGCTGCA 742294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980854540611480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |