Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq33366 136 4e-27 seq37082 114 1e-20 seq75383 104 2e-17 seq53349 89.7 5e-13 >seq33366 Length=1752596 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 780145 GGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 780087 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 780086 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 780027 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 780026 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 779967 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 779966 TTTTCACGAAGATTTGCAT 779948 >seq37082 Length=86608 Score = 114 bits (126), Expect = 1e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| |||||||| || || ||| | | | ||||| |||| Sbjct 35216 ATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCA-TCCTCCAGCT 35274 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||| | | | || || ||||||||||| || |||||||| |||| ||| ||| | Sbjct 35275 CTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGAT-T 35333 Query 133576 TTTGCT-TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| ||| ||||| ||||| ||||||| || || | ||| | ||| ||||| Sbjct 35334 TTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCC 35393 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 35394 ATCAGGGTCTTCACAAAGATCTGCAT 35419 >seq75383 Length=1910755 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 168974 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 168915 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || ||||||||||| || || ||||| |||| Sbjct 168914 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 168855 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | |||||||| || | |||| |||||| || || || || Sbjct 168854 ACATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 168795 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 168794 TTTACAAAGATCTGCAT 168778 >seq53349 Length=1677358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG----TCCTC 133510 ||||| | |||| |||||||||| || ||||| || || | | || || ||||| Sbjct 166121 AAATGCAGGGTGAACTCTTTCTGGATTTTGTAGTCTGACA--GAGCAC-AGCCCATCCTC 166177 Query 133511 GAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||| ||||| || ||| || |||||||||| || ||||||||||||| || Sbjct 166178 -AGCTGTTTGCCAGCAAAAACTAGATGCTGCTGGTCAGGCGGGATGCCTTCCTGATCATG 166236 Query 133571 GATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| || |||| | ||||| ||||| |||||| || || ||||| | | || Sbjct 166237 GATTTTGAATTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAGGGGTGATGATCTT 166296 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||| || || || |||||| |||| Sbjct 166297 GCCCTTCAGGGTCTTCACAAAAATCAGCAT 166326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482953573796800