Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq26538 266 4e-66 seq55365 212 7e-50 seq64303 82.4 9e-11 >seq26538 Length=599248 Score = 266 bits (294), Expect = 4e-66 Identities = 661/997 (66%), Gaps = 15/997 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 372529 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 372588 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| |||| || | || | ||| || | ||| || | Sbjct 372589 TGTCGAATTTGTTGGCAAACAAGTGGTGCGCGTGC---AACAGCCAGTTCAAATCACCAG 372645 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| ||||||||||||||||| || |||| || | Sbjct 372646 CTCCGAAAACGCACACAGAGCGCACGTGAACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 372705 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 372706 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 372765 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 372766 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 372825 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 372826 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 372885 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | || || || || | Sbjct 372886 TATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGC 372945 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 372946 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 373005 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 |||| | ||||| | | ||| ||||||| | ||||| ||| || || | Sbjct 373006 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 373062 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| ||| ||| ||| |||| | || || || || | Sbjct 373063 TCTCCGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 373122 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 373123 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 373182 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | ||| || ||||| | ||||| || || ||||| || || ||||| ||||| |||| Sbjct 373183 TCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACA 373242 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CAT 162833 | |||||||||| | | |||||||||||||||| ||| || || | || || || Sbjct 373243 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAG 373302 Query 162834 C-ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | |||| || | || || | ||| ||||| ||||| | || || | ||||| Sbjct 373303 CTGCAGCCAAAAAGGATTTC---TCTGATTTTCTATCCACGTGAATACAATAGAAATTCT 373359 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 373360 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 373419 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || || || ||||| || ||| || | || ||| || |||| Sbjct 373420 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 373479 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | | | | || | || || || | |||||||| Sbjct 373480 GCTTCTTGATGAAAGAAGCGCAATCACCAGTCATGTT 373516 >seq55365 Length=126199 Score = 212 bits (234), Expect = 7e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 41062 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 41003 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| ||||| | || || || ||| Sbjct 41002 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGA 40943 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 40942 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 40883 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 40882 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 40823 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 40822 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 40763 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 40762 CTCTTACATCCTGGGTCACCAC 40741 Score = 122 bits (134), Expect = 1e-22 Identities = 176/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 43913 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 43856 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| | |||||||| || || Sbjct 43855 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 43797 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | || ||||| || || || || || || | |||||||| | Sbjct 43796 TTGGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 43737 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 43736 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 43677 Query 171743 TCATAGTG 171750 | |||||| Sbjct 43676 TTATAGTG 43669 >seq64303 Length=392065 Score = 82.4 bits (90), Expect = 9e-11 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||| ||||| || || || ||| | | |||||| Sbjct 198960 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCACATGTATTCAGTAAGTATTTC 199019 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | | ||| || | | || || | | ||||||||| |||||||| || | Sbjct 199020 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCGGCCTGCACTCTGG 199077 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || ||| ||||| || |||| | ||||||||| ||| || | Sbjct 199078 ACCAGGAGGCATAAACCACGGGGACCAACTTACTGGCCATGAAGACATTGGGGAAGCAGG 199137 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 199138 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCACATCCACATGGAC 199195 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | | || || | || ||||| Sbjct 199196 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 199255 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| || || || || |||||||| || Sbjct 199256 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTC 199291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577872945472000