Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq26538 266 4e-66
seq55365 212 7e-50
seq64303 82.4 9e-11
>seq26538
Length=599248
Score = 266 bits (294), Expect = 4e-66
Identities = 661/997 (66%), Gaps = 15/997 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 372529 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 372588
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||| ||||| || |||| ||| |||| || | || | ||| || | ||| || |
Sbjct 372589 TGTCGAATTTGTTGGCAAACAAGTGGTGCGCGTGC---AACAGCCAGTTCAAATCACCAG 372645
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| |||||||| || |||||||| ||||||||||||||||| || |||| || |
Sbjct 372646 CTCCGAAAACGCACACAGAGCGCACGTGAACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 372705
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||| ||||| ||||| | || || |||||||| |
Sbjct 372706 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 372765
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||| ||||| | | | | || | || || || | || | ||||| | ||
Sbjct 372766 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 372825
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || ||||| || || || || || | ||||||||| |||| ||
Sbjct 372826 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 372885
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| | | || | ||| || || ||| | || | || || || || |
Sbjct 372886 TATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGC 372945
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | ||| || | |||||| ||| |||| | |
Sbjct 372946 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 373005
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597
|||| | ||||| | | ||| ||||||| | ||||| ||| || || |
Sbjct 373006 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 373062
Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
|| || ||||| |||| ||| ||| ||| |||| | || || || || |
Sbjct 373063 TCTCCGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 373122
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
|||| |||| ||||| || | ||||||||||| || | || ||||| | | |
Sbjct 373123 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 373182
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
| ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||
Sbjct 373183 TCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACA 373242
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CAT 162833
| |||||||||| | | |||||||||||||||| ||| || || | || || ||
Sbjct 373243 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAG 373302
Query 162834 C-ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892
| | |||| || | || || | ||| ||||| ||||| | || || | |||||
Sbjct 373303 CTGCAGCCAAAAAGGATTTC---TCTGATTTTCTATCCACGTGAATACAATAGAAATTCT 373359
Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952
|||| |||||||||||||| | || || | ||| || || || || || ||||| |
Sbjct 373360 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 373419
Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012
||||||| ||||| || || || ||||| || ||| || | || ||| || ||||
Sbjct 373420 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 373479
Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049
| | | | | || | || || || | ||||||||
Sbjct 373480 GCTTCTTGATGAAAGAAGCGCAATCACCAGTCATGTT 373516
>seq55365
Length=126199
Score = 212 bits (234), Expect = 7e-50
Identities = 240/322 (75%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || ||||| || ||||| |||||||| | |
Sbjct 41062 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 41003
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| | || || |||| |||||| ||||| ||||| | || || || |||
Sbjct 41002 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGA 40943
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || |
Sbjct 40942 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 40883
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 40882 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 40823
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||| | | |||| ||||||||||||||||||||||||||||||| |
Sbjct 40822 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 40763
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| | || || || |||||
Sbjct 40762 CTCTTACATCCTGGGTCACCAC 40741
Score = 122 bits (134), Expect = 1e-22
Identities = 176/248 (71%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| ||||
Sbjct 43913 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 43856
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| || || || || ||||| | || || ||||| | |||||||| || ||
Sbjct 43855 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 43797
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| ||| | || ||||| || || || || || || | |||||||| |
Sbjct 43796 TTGGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 43737
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| | ||| ||||| | |||| | ||||||||||| || |||| |||||| | ||
Sbjct 43736 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 43677
Query 171743 TCATAGTG 171750
| ||||||
Sbjct 43676 TTATAGTG 43669
>seq64303
Length=392065
Score = 82.4 bits (90), Expect = 9e-11
Identities = 223/336 (66%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | ||| ||||| || || || ||| | | ||||||
Sbjct 198960 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCACATGTATTCAGTAAGTATTTC 199019
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | | ||| || | | || || | | ||||||||| |||||||| || |
Sbjct 199020 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCGGCCTGCACTCTGG 199077
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || ||| ||||| || |||| | ||||||||| ||| || |
Sbjct 199078 ACCAGGAGGCATAAACCACGGGGACCAACTTACTGGCCATGAAGACATTGGGGAAGCAGG 199137
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| || || ||
Sbjct 199138 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCACATCCACATGGAC 199195
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||||| ||||||||||| || | || | ||| | | || || | || |||||
Sbjct 199196 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 199255
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| || || || || |||||||| ||
Sbjct 199256 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTC 199291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577872945472000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |