Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_024785.1 Length=44844 Score E Sequences producing significant alignments: (Bits) Value seq23535 264 3e-66 seq75598 113 1e-20 >seq23535 Length=854 Score = 264 bits (292), Expect = 3e-66 Identities = 412/589 (70%), Gaps = 0/589 (0%) Strand=Plus/Minus Query 43609 CCCATATCCAGCGATAAGTTACATCATCAAGATTGGCTTGATCTCGTCTGCGCTCTAAGT 43668 |||||||||||||||| ||| |||| || |||||||||| |||| | || ||||| | | Sbjct 751 CCCATATCCAGCGATATGTTTCATCGTCTAGATTGGCTTTATCTTGCCTACGCTCAATTT 692 Query 43669 CAAGAACACGAGGAAACCACGGATTATCAGAATAGTTCATTTCCACACACATACCAATAA 43728 | | ||| |||||||| ||||| ||||| || ||||| || || | | |||||| | Sbjct 691 CTAAAACCTCTGGAAACCAAGGATTGTCAGAGTAATTCATCTCTACGCCAACACCAATTA 632 Query 43729 GTTCGCCTGTTTCATCATCGTATATTTCGGGATGATTAAACCGAACATCCGTAGGGCTGC 43788 ||| || || ||||| |||||| |||| ||| || || | || Sbjct 631 ATTCACCGGTCAGGTCATCAAATATTTGATCATGACGAAAGCGTCTGCTTGTTGCACTAT 572 Query 43789 CGCGCTTCTCAGGGTTATAGGTAATATATACTTGTGAATTTTCCTCTCGCACTGTTGGCA 43848 ||||| | ||||| || | ||||| | || | ||| || || || ||||| || || | Sbjct 571 CGCGCCTTTCAGGATTCCATGTAATCCAAACCTCTGAGTTATCTTCACGCACAGTGGGTA 512 Query 43849 ATAGTTTTCTATACGCCATCTCAGATACGTTCTCAGCTTCATCAACCCAGCACAGTAAAA 43908 || ||| | | || | ||| || || | ||||| |||||||||||||| || |||| Sbjct 511 GTAATTTACGCCAAGCAAGCTCTGAAACATCTTCAGCCTCATCAACCCAGCAAAGCAAAA 452 Query 43909 TACGTGCTTTGGATTTGATACTGTCCAGATTGTGTCTAAGACCTGCAAACGTGTATTCAA 43968 |||| ||||| ||||| || |||| || || || | ||||| ||||| || | Sbjct 451 TACGCGCTTTAGATTTAATGCTGTTTAGGTTATGCCGTAGACCAGCAAAGCCATAACTGA 392 Query 43969 CCAGTCTGTTTTTAGTCCTGATGTAGTTCTCGCCCATATCGTAGTAATCATTCAGAAAAG 44028 | | ||||||| || | || || | || || ||||| || |||| ||||||||| | Sbjct 391 CTCTTTTGTTTTTGGTACGTATATAACTTTCACCAATATCATAATAATTATTCAGAAATG 332 Query 44029 GAACAGACCTGATAGCCTGCTTGATTTCCTCTAATGATGAGTCTGCTAGGGAGTTTAAGT 44088 | ||| || |||||||||||||| || | ||| || || | || | ||| | | Sbjct 331 GTGTGGACTGTATCGCCTGCTTGATTTCTTCCATTGAAGATTCAGAAAGCGTGTTCATGA 272 Query 44089 GTTCACGCGCACAAAGAATCACACCACTCTGGCCACTCTCAGCAAACATATAGCCCTTGA 44148 ||||||||||| || |||| ||||| | ||| ||||| ||||| ||||||| Sbjct 271 ATTCACGCGCACCGAGGATCATTCCACTGATTTGAGCCTCTGCAAAGATATAACCCTTGA 212 Query 44149 TTGCAGTCATCAGCGCAAATGATCGAGTCTTACCACTACCTCGACCGCC 44197 | |||||||| || ||||||||||||||||| || || ||||| || Sbjct 211 TAGCAGTCATAAGTGCAAATGATCGAGTCTTGGCAGATCCACGACCACC 163 >seq75598 Length=201 Score = 113 bits (124), Expect = 1e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 43150 CTTTTTTGTACGAGTAATCACGGAACTCTTTTAGCGTTTCTTTGCATCGTGAATGAATGT 43209 ||||||| || ||||| | ||||| |||| ||||||||||| || | |||||| | Sbjct 201 CTTTTTTATATGAGTAGTTTTTAAACTCATTTAATGTTTCTTTGCAGCGAGTATGAATAT 142 Query 43210 AGACTTTCTTAAACGATTTGATGAATTCAATACCATCCTCAACAGAACCTTTGCCCTTCT 43269 |||| |||||| ||| | || ||| | || ||||||||||| ||||||||||| |||| Sbjct 141 AGACACGCTTAAATGATCTAATAAATGCTATTCCATCCTCAACCGAACCTTTGCCTTTCT 82 Query 43270 CAACAGGCGC-AATTCTACGCAAACCTTTCTTTTTTAAATGACTAATAGATTCAGGACGA 43328 | ||| || | ||||| || || || |||||||||| || || || || | Sbjct 81 C-ACACGCTCTGATTCTCTTTAAGCCCTTACGACTTAAATGACTTATTGACTCTGGCCTC 23 Query 43329 GCGCTATCCGCATAAA 43344 ||| |||| ||||||| Sbjct 22 GCGTTATCTGCATAAA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143247552803040