Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_024785.1
Length=44844
Score E
Sequences producing significant alignments: (Bits) Value
seq23535 264 3e-66
seq75598 113 1e-20
>seq23535
Length=854
Score = 264 bits (292), Expect = 3e-66
Identities = 412/589 (70%), Gaps = 0/589 (0%)
Strand=Plus/Minus
Query 43609 CCCATATCCAGCGATAAGTTACATCATCAAGATTGGCTTGATCTCGTCTGCGCTCTAAGT 43668
|||||||||||||||| ||| |||| || |||||||||| |||| | || ||||| | |
Sbjct 751 CCCATATCCAGCGATATGTTTCATCGTCTAGATTGGCTTTATCTTGCCTACGCTCAATTT 692
Query 43669 CAAGAACACGAGGAAACCACGGATTATCAGAATAGTTCATTTCCACACACATACCAATAA 43728
| | ||| |||||||| ||||| ||||| || ||||| || || | | |||||| |
Sbjct 691 CTAAAACCTCTGGAAACCAAGGATTGTCAGAGTAATTCATCTCTACGCCAACACCAATTA 632
Query 43729 GTTCGCCTGTTTCATCATCGTATATTTCGGGATGATTAAACCGAACATCCGTAGGGCTGC 43788
||| || || ||||| |||||| |||| ||| || || | ||
Sbjct 631 ATTCACCGGTCAGGTCATCAAATATTTGATCATGACGAAAGCGTCTGCTTGTTGCACTAT 572
Query 43789 CGCGCTTCTCAGGGTTATAGGTAATATATACTTGTGAATTTTCCTCTCGCACTGTTGGCA 43848
||||| | ||||| || | ||||| | || | ||| || || || ||||| || || |
Sbjct 571 CGCGCCTTTCAGGATTCCATGTAATCCAAACCTCTGAGTTATCTTCACGCACAGTGGGTA 512
Query 43849 ATAGTTTTCTATACGCCATCTCAGATACGTTCTCAGCTTCATCAACCCAGCACAGTAAAA 43908
|| ||| | | || | ||| || || | ||||| |||||||||||||| || ||||
Sbjct 511 GTAATTTACGCCAAGCAAGCTCTGAAACATCTTCAGCCTCATCAACCCAGCAAAGCAAAA 452
Query 43909 TACGTGCTTTGGATTTGATACTGTCCAGATTGTGTCTAAGACCTGCAAACGTGTATTCAA 43968
|||| ||||| ||||| || |||| || || || | ||||| ||||| || |
Sbjct 451 TACGCGCTTTAGATTTAATGCTGTTTAGGTTATGCCGTAGACCAGCAAAGCCATAACTGA 392
Query 43969 CCAGTCTGTTTTTAGTCCTGATGTAGTTCTCGCCCATATCGTAGTAATCATTCAGAAAAG 44028
| | ||||||| || | || || | || || ||||| || |||| ||||||||| |
Sbjct 391 CTCTTTTGTTTTTGGTACGTATATAACTTTCACCAATATCATAATAATTATTCAGAAATG 332
Query 44029 GAACAGACCTGATAGCCTGCTTGATTTCCTCTAATGATGAGTCTGCTAGGGAGTTTAAGT 44088
| ||| || |||||||||||||| || | ||| || || | || | ||| | |
Sbjct 331 GTGTGGACTGTATCGCCTGCTTGATTTCTTCCATTGAAGATTCAGAAAGCGTGTTCATGA 272
Query 44089 GTTCACGCGCACAAAGAATCACACCACTCTGGCCACTCTCAGCAAACATATAGCCCTTGA 44148
||||||||||| || |||| ||||| | ||| ||||| ||||| |||||||
Sbjct 271 ATTCACGCGCACCGAGGATCATTCCACTGATTTGAGCCTCTGCAAAGATATAACCCTTGA 212
Query 44149 TTGCAGTCATCAGCGCAAATGATCGAGTCTTACCACTACCTCGACCGCC 44197
| |||||||| || ||||||||||||||||| || || ||||| ||
Sbjct 211 TAGCAGTCATAAGTGCAAATGATCGAGTCTTGGCAGATCCACGACCACC 163
>seq75598
Length=201
Score = 113 bits (124), Expect = 1e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 43150 CTTTTTTGTACGAGTAATCACGGAACTCTTTTAGCGTTTCTTTGCATCGTGAATGAATGT 43209
||||||| || ||||| | ||||| |||| ||||||||||| || | |||||| |
Sbjct 201 CTTTTTTATATGAGTAGTTTTTAAACTCATTTAATGTTTCTTTGCAGCGAGTATGAATAT 142
Query 43210 AGACTTTCTTAAACGATTTGATGAATTCAATACCATCCTCAACAGAACCTTTGCCCTTCT 43269
|||| |||||| ||| | || ||| | || ||||||||||| ||||||||||| ||||
Sbjct 141 AGACACGCTTAAATGATCTAATAAATGCTATTCCATCCTCAACCGAACCTTTGCCTTTCT 82
Query 43270 CAACAGGCGC-AATTCTACGCAAACCTTTCTTTTTTAAATGACTAATAGATTCAGGACGA 43328
| ||| || | ||||| || || || |||||||||| || || || || |
Sbjct 81 C-ACACGCTCTGATTCTCTTTAAGCCCTTACGACTTAAATGACTTATTGACTCTGGCCTC 23
Query 43329 GCGCTATCCGCATAAA 43344
||| |||| |||||||
Sbjct 22 GCGTTATCTGCATAAA 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143247552803040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |