Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq34609 120 7e-22
seq75383 114 3e-20
seq70604 114 3e-20
seq69229 109 1e-18
seq42836 109 1e-18
seq33366 98.7 2e-15
seq25926 98.7 2e-15
>seq34609
Length=2775773
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || ||||| || || |||||| | || || || || || ||| | |||
Sbjct 2545926 AAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCCTCAGATACAATAGAAAAT 2545867
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || ||| |||||||| |||||
Sbjct 2545866 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 2545807
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
| || ||||| ||||||||||| | |||||| | || |||||| | || || |||||
Sbjct 2545806 GTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 2545747
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| || | |||||||||||
Sbjct 2545746 ACTCTTCATCTAGCGTTGAGACTTCG 2545721
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| | || |||||||| ||||| || || | || ||||||| ||||||
Sbjct 2545721 CGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 2545780
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||||| || | ||||| || | ||| ||
Sbjct 2545781 CGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 2545824
>seq75383
Length=1910755
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || ||||| || ||||| |||||| |||| ||||| ||||
Sbjct 168781 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCGAGTGAC 168840
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| |||||||||||||| || || ||| ||
Sbjct 168841 ACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 168900
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| ||||| || ||| |||||||||| | || || | || |||||| ||
Sbjct 168901 AGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 168960
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| ||||| ||||| ||
Sbjct 168961 CAGAAAGAGTCCACTCTGCACCTGGT 168986
>seq70604
Length=2882449
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| | || || | || || ||| | |||
Sbjct 1789564 AAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCCTCGGATACAATAGAAAAT 1789505
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || ||| |||||||| |||||
Sbjct 1789504 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 1789445
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || | ||| ||||||||||| | |||||| | || |||||| | || || |||||
Sbjct 1789444 GCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 1789385
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| || || |||||||||||
Sbjct 1789384 ACTCTTCATCTAGTGTTGAGACTTCG 1789359
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| || || |||||||| ||||| || || | || ||||||| ||||||
Sbjct 1789359 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 1789418
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||| | || || ||||| || | ||| ||
Sbjct 1789419 CGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTG 1789462
>seq69229
Length=1436921
Score = 109 bits (120), Expect = 1e-18
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||||||| | || ||| |||||||| ||||| || || |||
Sbjct 420583 AAGATCCAGGATAAGGAAGGAATTCTTCCTGACCACCAAAGACTGATCTTTGCTGGCAAG 420524
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| | |||||| | || |||||| | || || ||| | |||||||
Sbjct 420523 CAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGCCCACTCTTCCT 420464
Query 206374 CTTGTTTTGAGACTT 206388
||||| |||||||||
Sbjct 420463 CTTGTGTTGAGACTT 420449
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813
||||||||| ||||| ||||||| | ||| || || | || ||||||| |||||| |
Sbjct 420449 AAGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 420508
Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||||||| ||||| || || ||||| || | ||| ||
Sbjct 420509 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTG 420550
>seq42836
Length=1893264
Score = 109 bits (120), Expect = 1e-18
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
||||| || || |||||| | | || || || || ||| | ||| |||| |
Sbjct 1011409 ACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTCGGAAACAATAGAAGATGTAATGGTC 1011468
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||||||| || ||| |||||||| ||||| || || |||
Sbjct 1011469 AAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGGAAG 1011528
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| | |||||| | || |||||| | || || ||||| ||||||||
Sbjct 1011529 CAAGTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCAT 1011588
Query 206374 CTTGTTTTGAGACTT 206388
| || |||||||||
Sbjct 1011589 TTAGTGTTGAGACTT 1011603
>seq33366
Length=1752596
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || ||||| |||| ||||| |||||| ||||
Sbjct 779963 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAT 780022
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| ||| || ||| || || || |||||
Sbjct 780023 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 780082
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||||||||| | ||| | | ||||||||| | |||||||||||
Sbjct 780083 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCG 780142
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 780143 ACCCTGCACCTGGT 780156
>seq25926
Length=4460019
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || ||| |||||||| |||||
Sbjct 2859621 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 2859562
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || | |||| | || || |||||
Sbjct 2859561 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAACATTCAAAAGGAGTCC 2859502
Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388
|||||| || || |||||||||
Sbjct 2859501 ACTCTTTGTCTAGTGTTGAGACTT 2859478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180650014451720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |