Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq42862 107 6e-20 seq38789 107 6e-20 seq36114 104 7e-19 seq17448 104 7e-19 seq42259 102 3e-18 seq75383 98.7 3e-17 seq30317 98.7 3e-17 seq84 98.7 3e-17 seq16 98.7 3e-17 seq58006 95.1 4e-16 seq38634 91.5 5e-15 seq24449 91.5 5e-15 seq29865 89.7 2e-14 seq12481 89.7 2e-14 seq18623 86.0 2e-13 seq12932 84.2 7e-13 seq50830 82.4 2e-12 seq28665 82.4 2e-12 >seq42862 Length=585711 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 401004 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 400945 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 400944 TCCCGGGTTTCGGC 400931 >seq38789 Length=767384 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 581145 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 581204 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 581205 TCCCGGGTTTCGGC 581218 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 570175 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 570116 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 570115 CCGGGTTTCGGC 570104 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 597314 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 597255 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 597254 CCGGGTTTCGGC 597243 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 619909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 619850 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 619849 CCGGGTTTCGGC 619838 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 702078 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 702019 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 702018 CCGGGTTTCGGC 702007 Score = 93.3 bits (102), Expect = 1e-15 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| |||||||| ||||||||||||||| |||||||||| |||||| Sbjct 591625 TGGCTGAAATAGCTCAGCTGGGAGAGAATTAGACTGAAGATCTTAAAGGTCCCCGGTTCA 591684 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 591685 ACCCCAGGTTT 591695 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| |||||||| || |||||| ||||||||||||||||||||| |||||||||| Sbjct 429027 GGCTGAAATAGCTCAGCTGAGAGAGCGTTAGACTGAAGATCTAAAGGTGCCTGGTTCAAT 428968 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 428967 CCCAGGTTT 428959 >seq36114 Length=1464811 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1148198 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1148257 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1148258 CCGGGTTTCGGC 1148269 >seq17448 Length=1045026 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 871560 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 871619 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 871620 CCGGGTTTCGGC 871631 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 876957 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCG 877016 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 877017 GGTTTCGGC 877025 >seq42259 Length=744646 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 248167 ATAGCTGAAATAGCTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 248108 Query 2826 ACCCCGGGCTT 2836 | |||||| || Sbjct 248107 ATCCCGGGTTT 248097 >seq75383 Length=1910755 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 156248 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 156307 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 156308 CCGGGTTTCGGC 156319 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||| |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 878646 TGGCCGAAATAGTTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAG 878705 Query 2827 CCCCGGGCTTCAGC 2840 |||||| |||||| Sbjct 878706 TCCCGGGTTTCAGC 878719 >seq30317 Length=1738398 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 820838 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 820779 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 820778 CCGGGTTTCGGC 820767 >seq84 Length=2635700 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1843995 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1843936 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1843935 CCGGGTTTCGGC 1843924 >seq16 Length=1714345 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1006884 GCTGAAGTAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1006943 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 1006944 CTGGGTTTCGGC 1006955 >seq58006 Length=884281 Score = 95.1 bits (104), Expect = 4e-16 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 491031 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 491090 Score = 95.1 bits (104), Expect = 4e-16 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 492210 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 492269 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 504135 GCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGCTCCCTGGTTCAA 504192 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 488492 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 488551 Query 2829 CCGGG 2833 || || Sbjct 488552 CCAGG 488556 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||| || | Sbjct 493509 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTACAGGTCCCTGCTTCAATCCCAGGTT 493568 Query 2836 TCAGC 2840 |||| Sbjct 493569 CCAGC 493573 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 || ||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||| Sbjct 498437 TAACTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGAGCT 498496 Score = 82.4 bits (90), Expect = 2e-12 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| | ||| |||| ||||| || |||||||||||||||||||||||||||||| | Sbjct 503646 GGCTGGAATAGTTCAGCTGGGACAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 503705 Query 2828 CCCGGGCTTCAGC 2840 |||||| | |||| Sbjct 503706 CCCGGGTTCCAGC 503718 >seq38634 Length=718678 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||| | ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 517599 ATGACCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 517540 Query 2826 ACCCCGGGCTTCAGC 2840 | || | |||||| Sbjct 517539 ATCCTGCATTTCAGC 517525 >seq24449 Length=247740 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||| | Sbjct 121710 AAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGGTCCTTGGTTCAATCCCAG 121769 Query 2833 GCTTCAGC 2840 |||||||| Sbjct 121770 GCTTCAGC 121777 >seq29865 Length=653454 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 630419 GCCGAAACAGCTCAGCTGGGAGAGCGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 630360 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 630359 CCGGGTTTC 630351 >seq12481 Length=2138255 Score = 89.7 bits (98), Expect = 2e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 439592 AAATAGCTCAGATGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCCGG 439533 Query 2833 GCTT 2836 | || Sbjct 439532 GTTT 439529 >seq18623 Length=3368665 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1884638 TGGCTGAAATAGCTAAGTTGGGAGAGTGTTAGAGGGAAGATCTAAAGGTCCCTGGTTCAA 1884579 Query 2827 CCCCGGGCTT 2836 || ||| || Sbjct 1884578 TCCTGGGTTT 1884569 >seq12932 Length=180899 Score = 84.2 bits (92), Expect = 7e-13 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 117499 TGGCTGAAATAGCTCAACTGCGAGAATGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 117440 Query 2827 CCCCGGGCTTCAGC 2840 || || |||||| Sbjct 117439 TTCCAGGTTTCAGC 117426 >seq50830 Length=1614372 Score = 82.4 bits (90), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTG-AAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||| ||| | |||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 883908 GCTGAAATAGGTTAGTTGGGAGAACATTAGACTGAAAAATCTAAAGGTCCCTGGTTCAAT 883967 Query 2828 CCCGGGCTTC 2837 ||| || ||| Sbjct 883968 CCCAGGTTTC 883977 >seq28665 Length=197128 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 161959 GCTGAAATAGCTCAGTTGGGAGATAATTATGCTGAAGATCTAAAGGTCCCTGGTTCAA 161902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15836196191400