Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq42862 107 6e-20
seq38789 107 6e-20
seq36114 104 7e-19
seq17448 104 7e-19
seq42259 102 3e-18
seq75383 98.7 3e-17
seq30317 98.7 3e-17
seq84 98.7 3e-17
seq16 98.7 3e-17
seq58006 95.1 4e-16
seq38634 91.5 5e-15
seq24449 91.5 5e-15
seq29865 89.7 2e-14
seq12481 89.7 2e-14
seq18623 86.0 2e-13
seq12932 84.2 7e-13
seq50830 82.4 2e-12
seq28665 82.4 2e-12
>seq42862
Length=585711
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 401004 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 400945
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 400944 TCCCGGGTTTCGGC 400931
>seq38789
Length=767384
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 581145 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 581204
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 581205 TCCCGGGTTTCGGC 581218
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 570175 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 570116
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 570115 CCGGGTTTCGGC 570104
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 597314 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 597255
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 597254 CCGGGTTTCGGC 597243
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 619909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 619850
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 619849 CCGGGTTTCGGC 619838
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 702078 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 702019
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 702018 CCGGGTTTCGGC 702007
Score = 93.3 bits (102), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825
|||||||| |||||||| |||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 591625 TGGCTGAAATAGCTCAGCTGGGAGAGAATTAGACTGAAGATCTTAAAGGTCCCCGGTTCA 591684
Query 2826 ACCCCGGGCTT 2836
||||| || ||
Sbjct 591685 ACCCCAGGTTT 591695
Score = 89.7 bits (98), Expect = 2e-14
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||||
Sbjct 429027 GGCTGAAATAGCTCAGCTGAGAGAGCGTTAGACTGAAGATCTAAAGGTGCCTGGTTCAAT 428968
Query 2828 CCCGGGCTT 2836
||| || ||
Sbjct 428967 CCCAGGTTT 428959
>seq36114
Length=1464811
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1148198 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1148257
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1148258 CCGGGTTTCGGC 1148269
>seq17448
Length=1045026
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 871560 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 871619
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 871620 CCGGGTTTCGGC 871631
Score = 102 bits (112), Expect = 3e-18
Identities = 64/69 (93%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 876957 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCG 877016
Query 2832 GGCTTCAGC 2840
|| ||| ||
Sbjct 877017 GGTTTCGGC 877025
>seq42259
Length=744646
Score = 102 bits (112), Expect = 3e-18
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 248167 ATAGCTGAAATAGCTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 248108
Query 2826 ACCCCGGGCTT 2836
| |||||| ||
Sbjct 248107 ATCCCGGGTTT 248097
>seq75383
Length=1910755
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 156248 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 156307
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 156308 CCGGGTTTCGGC 156319
Score = 93.3 bits (102), Expect = 1e-15
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| ||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 878646 TGGCCGAAATAGTTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAG 878705
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||||||
Sbjct 878706 TCCCGGGTTTCAGC 878719
>seq30317
Length=1738398
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 820838 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 820779
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 820778 CCGGGTTTCGGC 820767
>seq84
Length=2635700
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1843995 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1843936
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1843935 CCGGGTTTCGGC 1843924
>seq16
Length=1714345
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1006884 GCTGAAGTAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1006943
Query 2829 CCGGGCTTCAGC 2840
| ||| ||| ||
Sbjct 1006944 CTGGGTTTCGGC 1006955
>seq58006
Length=884281
Score = 95.1 bits (104), Expect = 4e-16
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 491031 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 491090
Score = 95.1 bits (104), Expect = 4e-16
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 492210 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 492269
Score = 87.8 bits (96), Expect = 6e-14
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 504135 GCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGCTCCCTGGTTCAA 504192
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 488492 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 488551
Query 2829 CCGGG 2833
|| ||
Sbjct 488552 CCAGG 488556
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835
|||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||| || |
Sbjct 493509 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTACAGGTCCCTGCTTCAATCCCAGGTT 493568
Query 2836 TCAGC 2840
||||
Sbjct 493569 CCAGC 493573
Score = 86.0 bits (94), Expect = 2e-13
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835
|| ||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||
Sbjct 498437 TAACTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGAGCT 498496
Score = 82.4 bits (90), Expect = 2e-12
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||||| | ||| |||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 503646 GGCTGGAATAGTTCAGCTGGGACAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 503705
Query 2828 CCCGGGCTTCAGC 2840
|||||| | ||||
Sbjct 503706 CCCGGGTTCCAGC 503718
>seq38634
Length=718678
Score = 91.5 bits (100), Expect = 5e-15
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 517599 ATGACCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 517540
Query 2826 ACCCCGGGCTTCAGC 2840
| || | ||||||
Sbjct 517539 ATCCTGCATTTCAGC 517525
>seq24449
Length=247740
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||| |
Sbjct 121710 AAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGGTCCTTGGTTCAATCCCAG 121769
Query 2833 GCTTCAGC 2840
||||||||
Sbjct 121770 GCTTCAGC 121777
>seq29865
Length=653454
Score = 89.7 bits (98), Expect = 2e-14
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 630419 GCCGAAACAGCTCAGCTGGGAGAGCGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 630360
Query 2829 CCGGGCTTC 2837
||||| |||
Sbjct 630359 CCGGGTTTC 630351
>seq12481
Length=2138255
Score = 89.7 bits (98), Expect = 2e-14
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 439592 AAATAGCTCAGATGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCCGG 439533
Query 2833 GCTT 2836
| ||
Sbjct 439532 GTTT 439529
>seq18623
Length=3368665
Score = 86.0 bits (94), Expect = 2e-13
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1884638 TGGCTGAAATAGCTAAGTTGGGAGAGTGTTAGAGGGAAGATCTAAAGGTCCCTGGTTCAA 1884579
Query 2827 CCCCGGGCTT 2836
|| ||| ||
Sbjct 1884578 TCCTGGGTTT 1884569
>seq12932
Length=180899
Score = 84.2 bits (92), Expect = 7e-13
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 117499 TGGCTGAAATAGCTCAACTGCGAGAATGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 117440
Query 2827 CCCCGGGCTTCAGC 2840
|| || ||||||
Sbjct 117439 TTCCAGGTTTCAGC 117426
>seq50830
Length=1614372
Score = 82.4 bits (90), Expect = 2e-12
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTG-AAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||| ||| | |||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 883908 GCTGAAATAGGTTAGTTGGGAGAACATTAGACTGAAAAATCTAAAGGTCCCTGGTTCAAT 883967
Query 2828 CCCGGGCTTC 2837
||| || |||
Sbjct 883968 CCCAGGTTTC 883977
>seq28665
Length=197128
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 161959 GCTGAAATAGCTCAGTTGGGAGATAATTATGCTGAAGATCTAAAGGTCCCTGGTTCAA 161902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15836196191400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |