Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq33366 114 1e-20 seq70604 98.7 9e-16 seq42836 96.9 3e-15 seq34609 96.9 3e-15 seq25926 86.0 6e-12 >seq33366 Length=1752596 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 780139 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 780080 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 780079 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 780020 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| |||||||| Sbjct 780019 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 779960 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 779959 GAAGATTTGCATTTTG 779944 >seq70604 Length=2882449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1789412 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||| | || ||||| |||| | |||||||| | |||| Sbjct 1789413 AAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 1789472 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | | ||| Sbjct 1789473 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACC 1789532 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || ||||| || |||||||| Sbjct 1789533 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579 >seq42836 Length=1893264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||| | |||||||| ||||| | || |||||||||||||||||| || | | Sbjct 1011611 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1011552 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 1011551 AAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 1011492 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| | | | | | | | || || | || ||| Sbjct 1011491 ATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACC 1011432 Query 35690 TCCACCGTGATCGTTTTACCCGTCAA-AGTTTTCACAAATATCTGCAT 35736 | | ||||| || || || ||||| ||| |||||||| |||||||| Sbjct 1011431 TTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384 >seq34609 Length=2775773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | |||||| | | ||| | || |||||||||||||||||| || | Sbjct 2545714 TCCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2545773 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || ||||| ||||| || |||| |||| | |||||||| | ||| Sbjct 2545774 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGG 2545833 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||||| ||| |||||| ||| | | || | | || || | || || Sbjct 2545834 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGAC 2545893 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || |||| || |||| || |||||||| Sbjct 2545894 CTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCAT 2545941 >seq25926 Length=4460019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||| | || | ||| || || | || ||||| ||||| || ||||| Sbjct 2859505 CTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 2859564 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| | |||||||| | ||||| | ||||| ||| |||||| ||| | | | Sbjct 2859565 GATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 2859624 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | || ||||| | ||||| || || | ||||| || ||||| Sbjct 2859625 TTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCAC 2859684 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2859685 GAAAATCTGCAT 2859696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450357907985600