Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36501 123 3e-23 seq29163 120 4e-22 seq26065 107 3e-18 seq65209 93.3 6e-14 seq6493 84.2 3e-11 >seq36501 Length=2370580 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 2290866 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2290807 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 2290806 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2290747 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2290746 TTTCTTATACCAT 2290734 >seq29163 Length=2664742 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398 Query 39759 CAAC 39762 | || Sbjct 301397 CTAC 301394 >seq26065 Length=1373002 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1017607 Query 39761 AC 39762 || Sbjct 1017606 AC 1017605 >seq65209 Length=3338390 Score = 93.3 bits (102), Expect = 6e-14 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| |||| | | || |||| || ||| ||| ||| | || | Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| ||| || ||||||||||| Sbjct 2239614 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 2239673 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || |||||||||| || |||| | ||| || || | |||||| Sbjct 2239674 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 2239733 Query 37584 TATTCTTCCATAACA 37598 | ||||||||| || Sbjct 2239734 CACTCTTCCATAGCA 2239748 >seq6493 Length=163338 Score = 84.2 bits (92), Expect = 3e-11 Identities = 234/355 (66%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 143122 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| | || | | || ||||| || |||| ||| ||| | || | Sbjct 143123 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 143182 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| ||| | ||||||||||| Sbjct 143183 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCTTC 143242 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || || ||||||| || |||| | ||| | || | |||||| Sbjct 143243 ATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGAGC 143302 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 ||||||||| || || | | ||| |||| || ||||| | ||| || Sbjct 143303 CGCTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA-CAA-GCACT 143360 Query 37644 TTCTCCA--GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGG 37696 ||||||| || | | || ||||| || || || || | ||||| ||||||| Sbjct 143361 TTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGCGG 143415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686244902644800