Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_027296.1 Length=53721 Score E Sequences producing significant alignments: (Bits) Value seq25291 158 4e-34 >seq25291 Length=77000 Score = 158 bits (174), Expect = 4e-34 Identities = 349/513 (68%), Gaps = 28/513 (5%) Strand=Plus/Plus Query 18598 ACTATCGAGGGGAGCG-CCGACAAGGCGAAGAAGTCCCTTGCGTGGATCACCGAGTTCGC 18656 || |||||||| | || |||| |||||| | |||| || | ||| | | |||||||| Sbjct 23679 ACCATCGAGGG-ATCGACCGAAAAGGCGCGGCAGTCGCTGGATTGGGTTGCTGAGTTCGC 23737 Query 18657 GAAAACAACCCCTTACGACGT--AGCAGG--GGTGACCGAGGCCTTTGTGAAGTTGAAGG 18712 ||| ||||| || ||| | |||||| ||||| ||| || || || || Sbjct 23738 TCAAAAGACCCCGTATGACCTGAAGCAGGTCGGTGA----GGCGTTCGTTCGCCTGCGGG 23793 Query 18713 CATACGGGTTGGACCCAATGGACGGCAGT----CTTGTCGCCCTCGGTGACGCCGCGTCC 18768 | || || ||||||| |||| ||| |||| ||| || || || | || Sbjct 23794 CTTATGGTCTGGACCC----GACGACAGGTCTGCTTGAAAGCCTTGGCGATGCTTCTTCG 23849 Query 18769 GGCATGGGCAAAACGCTCAACCAAGCGGTCGAGGCGATGGCGGATGCCGTCACAGGCGAG 18828 | |||||| ||| || | ||||||||| ||| |||||||| || |||||| Sbjct 23850 GCCATGGGTAAAGACCTGATGGCAGCGGTCGAAATGATCGCGGATGCTTCGACGGGCGAG 23909 Query 18829 AACGAGCGCCTGAAAGAATTTGGCAT---CACGACCAAGGTGGCAGGGGATCAAATCACC 18885 ||||| ||||||||||||||| | | || | ||| | || || || | || Sbjct 23910 TTTGAGCGGCTGAAAGAATTTGGCCTTCGCGCGTCACAGG---CTGGTGACCAGGTGACG 23966 Query 18886 TACACTTGGCGACAGAACGGCAAAGAGATGTCGAAGACGCTCAAGAAGAACGGCGTCGAG 18945 | | | ||| | | ||||| ||||| | | ||||| | || |||| ||||| |||| Sbjct 23967 TTCTCCTGGACAGAAAACGGTAAAGACCTCACCAAGACTGTGAAAAAGAGCGGCGCCGAG 24026 Query 18946 ATCGCCAAGTTCTTGCGCGACAACTTCGAAGGCCGCTTTGCCGGCGCAATGATCCGCCAG 19005 || || |||| | || || | |||| | ||| ||| |||||| |||||||| ||| Sbjct 24027 ATTACCGGGTTCATCCGTGAGCAGTTCGGAAACCGTTTTAGCGGCGCCATGATCCGGCAG 24086 Query 19006 TCGAAGACGTGGAACGGGATGATCTCGAACCTCGGCGACACCTGGAC-AGGCTTC-CAAC 19063 |||| |||||||||||| |||||||| ||||| || || | |||||| || ||| | || Sbjct 24087 TCGACGACGTGGAACGGCATGATCTCCAACCTAGGGGATAGCTGGACGCGGTTTCTCTAC 24146 Query 19064 GAATGATCGGCGACGCCGGTTTCTTCGAAGCCG 19096 | |||||| | || || |||||||||| || Sbjct 24147 --AAGATCGGGCAGGCTGGGTTCTTCGAAGTCG 24177 Score = 145 bits (160), Expect = 3e-30 Identities = 363/539 (67%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 16662 CGGCAA-GTTCAAGAAGATTCGCGGCATCGCCGCAATCAACAAGGGCTCGGCCGCGGTGC 16720 |||||| ||||||| | | ||||| |||| | |||| || || || |||||| Sbjct 20238 CGGCAAAGTTCAAGTTCCTGCCTGGCATTCCCGCCGTTAACATTGGGTCAGCTGCGGTGA 20297 Query 16721 AGGCAATCACCGGCTTCACCCCTGCCCTCGGTCAATCGACCACCGCAGGCCACATGGCCA 16780 ||| |||| || ||||| || | | || || || | | ||| ||||||| | Sbjct 20298 CAGCAGTCACGGGATTCACGCCGGGAGTTGGACAGTCCGAGTCTGTCGGCAACATGGCGA 20357 Query 16781 ACACGCTGGTCGATATCGGCGGGCAGAT-CTTCGTTGTCGAGGGCTCGACGCTCACGCCG 16839 | || | ||| ||||| | |||| |||||| || || || |||||||| ||| | Sbjct 20358 ATACATACATTGATGTCGGCAG-CAGAAACTTCGTGGTGGAAGGGTCGACGCTGACGGCA 20416 Query 16840 AACGTCTTCATTGACGAGATCCACGCGACCGACTGGATCATCGCTCGCACCGAAGAACAG 16899 ||||||||| |||| || ||||| |||| |||||||||||||| |||||||| ||| | Sbjct 20417 AACGTCTTCCTTGATGAAATCCATACGACGGACTGGATCATCGCACGCACCGAGGAAGAA 20476 Query 16900 ACCCTCGGCGTCCTGTTGAACAATGCCCGTGTCCCGTTCACAAACTCGGGGATGGAACTG 16959 || || ||| ||||| | ||||||||||| || |||| || || ||| | || Sbjct 20477 ACGCTTGGCATCCTGCTCAACAATGCCCGCATCAAGTTCGATGACAGCGGCATGCAGATG 20536 Query 16960 CTTGCTTCCGGCGCCCGGACGGTCATGCGCGTTGCTGAC-CGCGCTGGTCTCATCGCGAA 17018 |||||| | | ||||| ||||||| || ||| || || ||||| ||||||| Sbjct 20537 CTTGCTGGGGCGGTTCGGACCGTCATGCAGCAAGC-GACACGAGCCGGTCTGATCGCGAG 20595 Query 17019 CGATGACAA---GGACGACCTGGGCAACTTCCGTCCCGCCGTCCAGTTCGAGATCCCGGA 17075 ||| ||| ||| ||| |||| | | | | ||||| ||| | ||||| Sbjct 20596 CGACCTCAACCCGGA-GAC--GGGCGAATACGAGGCAGCCGTACAGATAACTGTCCCGAG 20652 Query 17076 CGTGTTCAGTGTGCCGGAATCGCAGAGGAAGGCGCGTATCGCCCCGCCGATC-AAAGTCA 17134 ||| || ||| || ||| ||| | ||||| || || || || ||||| || | | Sbjct 20653 CGTCTTTGATGTCCCCGAAAGCCAGCGCAAGGCTCGCATTGCTCCCGCGATCGAATGCCG 20712 Query 17135 CTTTCCGCTACGCCGGCGCGGTGCACTACACGACCATTAACTACAACATGACCTTCTAA 17193 |||| || || || || || ||||| | | || | | ||| | ||||| |||||| Sbjct 20713 CTTT-CGGTATGCGGGAGCCGTGCATTTCGTCACGGTGAGATACCAAATGACGTTCTAA 20770 Score = 129 bits (142), Expect = 2e-25 Identities = 675/1060 (64%), Gaps = 57/1060 (5%) Strand=Plus/Plus Query 20773 CCGCCGCGTCACGGTGCGCGTTCGCTACAACCCGACAACCGACCGGTGGAGTTTCGACCT 20832 ||| ||| ||||| | ||||| || ||||| ||| | | ||||| ||| ||||| || Sbjct 25818 CCGGCGCATCACGCTCCGCGTCCGTTACAATCCGTCGTCTGACCGATGGTCCTTCGATCT 25877 Query 20833 TTCGATTGATGACGTGCCTGTACTTTACGGGCGGCGTATCGTCACCGGGGTCGACCTGCT 20892 |||||||||||| |||||| ||| | |||||||| || || || ||| | || || | Sbjct 25878 TTCGATTGATGATCAGCCTGTCCTTCAGGGGCGGCGGATTGTAACGGGGATAGATCTTC- 25936 Query 20893 TCGC-GCTTACGATTTCGGGATCGGGTTGATCTTTGCGGCCGCTGTAACCAACGGCGCGG 20951 |||| | | |||||||||| | || | ||||| || || | ||||| | ||| ||| Sbjct 25937 TCGCACCATTCGATTTCGGGCTGGGCGTCATCTTCGCCGCATCCGTAACTGAAGGCTCGG 25996 Query 20952 TCCCGGATCGCTCGAGCTTGCCGGCAGGGCTGGTGCGCATTTATTACGCATCGACCGAAG 21011 || ||||| ||| |||||||| || || || ||| | ||| | ||| | Sbjct 25997 AGCCTGATCGATCGGCTTTGCCGGCGGGCACCGTCCGACTTTTCCATGCAACTGACGAGG 26056 Query 21012 AATACGAGG-----CCGCACTTG---CAACAGTATCTTAGAAAGGTTCGCTTGACGGCGA 21063 || || || | | | || | || ||||| | |||| | | ||||| Sbjct 26057 AAGTCGCGGAGGTTCAGTAAATGGCTCTGCAATATCTACGGAAGG------TCAGGGCGA 26110 Query 21064 AAGGCAAGGGCGGGTCAATTGTCATTAACCCGG---GCGGCCTCTCGTTGCACGAACTCA 21120 | || ||||||| | |||| | ||||| || | ||| || | ||| Sbjct 26111 AGTTTAATGGCGGGTATGTCGTCA--ATCCCGGAAACAGGACAGTCG----ACCAGATCA 26164 Query 21121 AGATTGCTTTCACGATTACGAAGAGCATAAGCTCGA---CACAGAACAGCGCAAGCATCC 21177 |||| ||||| ||| |||||| | ||| |||| | |||| ||| |||| Sbjct 26165 AGATCGCTTTTCAGATAACGAAGGGGATA---TCGAGTTCCGCGAACTCGGCAGACATCA 26221 Query 21178 GCATTTGGAACCTCTCGGATGCGACCCGCTACGCGTTGGGCAAAGAGCTTGACGACG-TG 21236 | ||| || || | || || || || | ||||| ||||| ||| ||| | Sbjct 26222 CCCTTTTTAATCTGGCCGAAAGCACTCGGAACAGCATCGGCAAGGAGCTGGAC-ACGATC 26280 Query 21237 ACGCTTGAAGCAGGTTATTACCCGCC---AGAAGGCGGCAATAATGTCGGGATTATTTTC 21293 || ||||| || |||||| |||||| ||| |||| || ||||| |||| ||| Sbjct 26281 ACTCTTGAGGCCGGTTATATCCCGCCGGGCGAAAGCGG---GAACGTCGGTGTTATCTTC 26337 Query 21294 -AGCGGGCAGATCCGCGATATCGAGCACAGCCGAGAAGGCAACGATATCATCTCGGAGCT 21352 || | || | | || || | |||||| | |||| ||| ||||||| | | Sbjct 26338 AAGGGCGCTG-TGCGGGACGTAGAGCACCGAAGAGACGGCCCGAATATCATGACCATCAT 26396 Query 21353 GTCTTGCGGGGATGCCGATAAAGCGTTTCGCCATGCGACCATCTCGAAGACTTACCCGAA 21412 || ||||| || | ||| |||||| | | | || || || || | | ||| Sbjct 26397 TTCCTGCGGCGACGGCGACAAAGCGCTCAGGCGAGCCACTATAAGCAAATCCTTCCCAGC 26456 Query 21413 AGGGACCGAGGTAAAGACGGTCGTTGATGACATCTACAAGGAAATGGCCAAGCAAGGCGT 21472 || || ||| ||| || || ||||| ||| |||| | |||| ||||| ||||| Sbjct 26457 CGGCACTCCGGTCAAGGATGTGGTGGATGAAATCGCCAAGCAGATGGAAAAGCAGGGCGT 26516 Query 21473 GACGAAGGGCGAATGGAAATTCCCCGACAA-----CACGC-CGACATTCAAACGACCCTA 21526 || ||||| | || | || || | | || ||| ||||| || || || Sbjct 26517 GAGCCGCGGCGAGTTCAAGTATCCAGAGGATCTGGAAAGCAAGACGTTCAAGCGCCCATA 26576 Query 21527 --CAGCGTTTGCGGGACTTGCAAACGTGAGCTCGATACGTTGGGCAGGGGCAAGGATTTT 21584 |||| |||||| | ||| | ||| | |||||| | ||| | || || | ||| Sbjct 26577 TGCAGC--TTGCGGTTCATGCTCCAGAGAGATGGATACGATCGGCCGAGGGAATGGCTTT 26634 Query 21585 TATTGGTCCGTGCAGAACGGGGTGATGGAGGTGGTACCTGGGAACGGGTTCATCGGAGGG 21644 || |||||| | ||||||| | ||| ||| | || || || || |||| ||||| | Sbjct 26635 TACTGGTCCATCCAGAACGAGACGATCGAGATCGTCCCCGGCAATGGGTATGTCGGAAG- 26693 Query 21645 GTCGTCATGTTGTCGGCAC---AAACTGGGTTGATCGATACCCCTTCGATCACGGACAAC 21701 ||||| | || ||| |||| || |||||| || || |||| || || | Sbjct 26694 --CGTCACGCTGATCACACCGGAAACCGGCATGATCGGAACGCCAGCGATAACCGATACG 26751 Query 21702 GGCGTCAAGGCGAAAGCCTTGCTCAACCCCGAGATCCGTCCGAACCGTCGAGTTCAGATC 21761 || | | | ||| || | | ||||| || || ||||| ||||| || | ||| || Sbjct 26752 GGAATTAGAGTGAAGGCTCTATTGAACCCAGAAATTCGTCCTAACCGACGCATCCAGGTC 26811 Query 21762 AACAGCGAGGTTCTCGAAATGAACTCTGAGAACGGGATGT 21801 || ||| || | | |||||||| ||| || |||| |||| Sbjct 26812 AAAAGCCAGACTTTGGAAATGAATTCTCAGGACGGCATGT 26851 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 15057 CCGCCGAATAGCCCGGTGACCATCGAGCGCAAAGGCTCGAGCAACCCGCTTATCGACACC 15116 |||||||| || |||||||| ||||||| || ||||| ||||||||||||||||||| | Sbjct 18531 CCGCCGAACAGTCCGGTGACGATCGAGCTAAAGGGCTCAAGCAACCCGCTTATCGACAGC 18590 Query 15117 GGCGCAATGAGGCAGGCTGTAACCTGG 15143 |||| |||| | ||| || ||||| Sbjct 18591 GGCGAAATGCGAGCGGCCATAGCCTGG 18617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171627870756720