Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_027296.1
Length=53721
Score E
Sequences producing significant alignments: (Bits) Value
seq25291 158 4e-34
>seq25291
Length=77000
Score = 158 bits (174), Expect = 4e-34
Identities = 349/513 (68%), Gaps = 28/513 (5%)
Strand=Plus/Plus
Query 18598 ACTATCGAGGGGAGCG-CCGACAAGGCGAAGAAGTCCCTTGCGTGGATCACCGAGTTCGC 18656
|| |||||||| | || |||| |||||| | |||| || | ||| | | ||||||||
Sbjct 23679 ACCATCGAGGG-ATCGACCGAAAAGGCGCGGCAGTCGCTGGATTGGGTTGCTGAGTTCGC 23737
Query 18657 GAAAACAACCCCTTACGACGT--AGCAGG--GGTGACCGAGGCCTTTGTGAAGTTGAAGG 18712
||| ||||| || ||| | |||||| ||||| ||| || || || ||
Sbjct 23738 TCAAAAGACCCCGTATGACCTGAAGCAGGTCGGTGA----GGCGTTCGTTCGCCTGCGGG 23793
Query 18713 CATACGGGTTGGACCCAATGGACGGCAGT----CTTGTCGCCCTCGGTGACGCCGCGTCC 18768
| || || ||||||| |||| ||| |||| ||| || || || | ||
Sbjct 23794 CTTATGGTCTGGACCC----GACGACAGGTCTGCTTGAAAGCCTTGGCGATGCTTCTTCG 23849
Query 18769 GGCATGGGCAAAACGCTCAACCAAGCGGTCGAGGCGATGGCGGATGCCGTCACAGGCGAG 18828
| |||||| ||| || | ||||||||| ||| |||||||| || ||||||
Sbjct 23850 GCCATGGGTAAAGACCTGATGGCAGCGGTCGAAATGATCGCGGATGCTTCGACGGGCGAG 23909
Query 18829 AACGAGCGCCTGAAAGAATTTGGCAT---CACGACCAAGGTGGCAGGGGATCAAATCACC 18885
||||| ||||||||||||||| | | || | ||| | || || || | ||
Sbjct 23910 TTTGAGCGGCTGAAAGAATTTGGCCTTCGCGCGTCACAGG---CTGGTGACCAGGTGACG 23966
Query 18886 TACACTTGGCGACAGAACGGCAAAGAGATGTCGAAGACGCTCAAGAAGAACGGCGTCGAG 18945
| | | ||| | | ||||| ||||| | | ||||| | || |||| ||||| ||||
Sbjct 23967 TTCTCCTGGACAGAAAACGGTAAAGACCTCACCAAGACTGTGAAAAAGAGCGGCGCCGAG 24026
Query 18946 ATCGCCAAGTTCTTGCGCGACAACTTCGAAGGCCGCTTTGCCGGCGCAATGATCCGCCAG 19005
|| || |||| | || || | |||| | ||| ||| |||||| |||||||| |||
Sbjct 24027 ATTACCGGGTTCATCCGTGAGCAGTTCGGAAACCGTTTTAGCGGCGCCATGATCCGGCAG 24086
Query 19006 TCGAAGACGTGGAACGGGATGATCTCGAACCTCGGCGACACCTGGAC-AGGCTTC-CAAC 19063
|||| |||||||||||| |||||||| ||||| || || | |||||| || ||| | ||
Sbjct 24087 TCGACGACGTGGAACGGCATGATCTCCAACCTAGGGGATAGCTGGACGCGGTTTCTCTAC 24146
Query 19064 GAATGATCGGCGACGCCGGTTTCTTCGAAGCCG 19096
| |||||| | || || |||||||||| ||
Sbjct 24147 --AAGATCGGGCAGGCTGGGTTCTTCGAAGTCG 24177
Score = 145 bits (160), Expect = 3e-30
Identities = 363/539 (67%), Gaps = 13/539 (2%)
Strand=Plus/Plus
Query 16662 CGGCAA-GTTCAAGAAGATTCGCGGCATCGCCGCAATCAACAAGGGCTCGGCCGCGGTGC 16720
|||||| ||||||| | | ||||| |||| | |||| || || || ||||||
Sbjct 20238 CGGCAAAGTTCAAGTTCCTGCCTGGCATTCCCGCCGTTAACATTGGGTCAGCTGCGGTGA 20297
Query 16721 AGGCAATCACCGGCTTCACCCCTGCCCTCGGTCAATCGACCACCGCAGGCCACATGGCCA 16780
||| |||| || ||||| || | | || || || | | ||| ||||||| |
Sbjct 20298 CAGCAGTCACGGGATTCACGCCGGGAGTTGGACAGTCCGAGTCTGTCGGCAACATGGCGA 20357
Query 16781 ACACGCTGGTCGATATCGGCGGGCAGAT-CTTCGTTGTCGAGGGCTCGACGCTCACGCCG 16839
| || | ||| ||||| | |||| |||||| || || || |||||||| ||| |
Sbjct 20358 ATACATACATTGATGTCGGCAG-CAGAAACTTCGTGGTGGAAGGGTCGACGCTGACGGCA 20416
Query 16840 AACGTCTTCATTGACGAGATCCACGCGACCGACTGGATCATCGCTCGCACCGAAGAACAG 16899
||||||||| |||| || ||||| |||| |||||||||||||| |||||||| ||| |
Sbjct 20417 AACGTCTTCCTTGATGAAATCCATACGACGGACTGGATCATCGCACGCACCGAGGAAGAA 20476
Query 16900 ACCCTCGGCGTCCTGTTGAACAATGCCCGTGTCCCGTTCACAAACTCGGGGATGGAACTG 16959
|| || ||| ||||| | ||||||||||| || |||| || || ||| | ||
Sbjct 20477 ACGCTTGGCATCCTGCTCAACAATGCCCGCATCAAGTTCGATGACAGCGGCATGCAGATG 20536
Query 16960 CTTGCTTCCGGCGCCCGGACGGTCATGCGCGTTGCTGAC-CGCGCTGGTCTCATCGCGAA 17018
|||||| | | ||||| ||||||| || ||| || || ||||| |||||||
Sbjct 20537 CTTGCTGGGGCGGTTCGGACCGTCATGCAGCAAGC-GACACGAGCCGGTCTGATCGCGAG 20595
Query 17019 CGATGACAA---GGACGACCTGGGCAACTTCCGTCCCGCCGTCCAGTTCGAGATCCCGGA 17075
||| ||| ||| ||| |||| | | | | ||||| ||| | |||||
Sbjct 20596 CGACCTCAACCCGGA-GAC--GGGCGAATACGAGGCAGCCGTACAGATAACTGTCCCGAG 20652
Query 17076 CGTGTTCAGTGTGCCGGAATCGCAGAGGAAGGCGCGTATCGCCCCGCCGATC-AAAGTCA 17134
||| || ||| || ||| ||| | ||||| || || || || ||||| || | |
Sbjct 20653 CGTCTTTGATGTCCCCGAAAGCCAGCGCAAGGCTCGCATTGCTCCCGCGATCGAATGCCG 20712
Query 17135 CTTTCCGCTACGCCGGCGCGGTGCACTACACGACCATTAACTACAACATGACCTTCTAA 17193
|||| || || || || || ||||| | | || | | ||| | ||||| ||||||
Sbjct 20713 CTTT-CGGTATGCGGGAGCCGTGCATTTCGTCACGGTGAGATACCAAATGACGTTCTAA 20770
Score = 129 bits (142), Expect = 2e-25
Identities = 675/1060 (64%), Gaps = 57/1060 (5%)
Strand=Plus/Plus
Query 20773 CCGCCGCGTCACGGTGCGCGTTCGCTACAACCCGACAACCGACCGGTGGAGTTTCGACCT 20832
||| ||| ||||| | ||||| || ||||| ||| | | ||||| ||| ||||| ||
Sbjct 25818 CCGGCGCATCACGCTCCGCGTCCGTTACAATCCGTCGTCTGACCGATGGTCCTTCGATCT 25877
Query 20833 TTCGATTGATGACGTGCCTGTACTTTACGGGCGGCGTATCGTCACCGGGGTCGACCTGCT 20892
|||||||||||| |||||| ||| | |||||||| || || || ||| | || || |
Sbjct 25878 TTCGATTGATGATCAGCCTGTCCTTCAGGGGCGGCGGATTGTAACGGGGATAGATCTTC- 25936
Query 20893 TCGC-GCTTACGATTTCGGGATCGGGTTGATCTTTGCGGCCGCTGTAACCAACGGCGCGG 20951
|||| | | |||||||||| | || | ||||| || || | ||||| | ||| |||
Sbjct 25937 TCGCACCATTCGATTTCGGGCTGGGCGTCATCTTCGCCGCATCCGTAACTGAAGGCTCGG 25996
Query 20952 TCCCGGATCGCTCGAGCTTGCCGGCAGGGCTGGTGCGCATTTATTACGCATCGACCGAAG 21011
|| ||||| ||| |||||||| || || || ||| | ||| | ||| |
Sbjct 25997 AGCCTGATCGATCGGCTTTGCCGGCGGGCACCGTCCGACTTTTCCATGCAACTGACGAGG 26056
Query 21012 AATACGAGG-----CCGCACTTG---CAACAGTATCTTAGAAAGGTTCGCTTGACGGCGA 21063
|| || || | | | || | || ||||| | |||| | | |||||
Sbjct 26057 AAGTCGCGGAGGTTCAGTAAATGGCTCTGCAATATCTACGGAAGG------TCAGGGCGA 26110
Query 21064 AAGGCAAGGGCGGGTCAATTGTCATTAACCCGG---GCGGCCTCTCGTTGCACGAACTCA 21120
| || ||||||| | |||| | ||||| || | ||| || | |||
Sbjct 26111 AGTTTAATGGCGGGTATGTCGTCA--ATCCCGGAAACAGGACAGTCG----ACCAGATCA 26164
Query 21121 AGATTGCTTTCACGATTACGAAGAGCATAAGCTCGA---CACAGAACAGCGCAAGCATCC 21177
|||| ||||| ||| |||||| | ||| |||| | |||| ||| ||||
Sbjct 26165 AGATCGCTTTTCAGATAACGAAGGGGATA---TCGAGTTCCGCGAACTCGGCAGACATCA 26221
Query 21178 GCATTTGGAACCTCTCGGATGCGACCCGCTACGCGTTGGGCAAAGAGCTTGACGACG-TG 21236
| ||| || || | || || || || | ||||| ||||| ||| ||| |
Sbjct 26222 CCCTTTTTAATCTGGCCGAAAGCACTCGGAACAGCATCGGCAAGGAGCTGGAC-ACGATC 26280
Query 21237 ACGCTTGAAGCAGGTTATTACCCGCC---AGAAGGCGGCAATAATGTCGGGATTATTTTC 21293
|| ||||| || |||||| |||||| ||| |||| || ||||| |||| |||
Sbjct 26281 ACTCTTGAGGCCGGTTATATCCCGCCGGGCGAAAGCGG---GAACGTCGGTGTTATCTTC 26337
Query 21294 -AGCGGGCAGATCCGCGATATCGAGCACAGCCGAGAAGGCAACGATATCATCTCGGAGCT 21352
|| | || | | || || | |||||| | |||| ||| ||||||| | |
Sbjct 26338 AAGGGCGCTG-TGCGGGACGTAGAGCACCGAAGAGACGGCCCGAATATCATGACCATCAT 26396
Query 21353 GTCTTGCGGGGATGCCGATAAAGCGTTTCGCCATGCGACCATCTCGAAGACTTACCCGAA 21412
|| ||||| || | ||| |||||| | | | || || || || | | |||
Sbjct 26397 TTCCTGCGGCGACGGCGACAAAGCGCTCAGGCGAGCCACTATAAGCAAATCCTTCCCAGC 26456
Query 21413 AGGGACCGAGGTAAAGACGGTCGTTGATGACATCTACAAGGAAATGGCCAAGCAAGGCGT 21472
|| || ||| ||| || || ||||| ||| |||| | |||| ||||| |||||
Sbjct 26457 CGGCACTCCGGTCAAGGATGTGGTGGATGAAATCGCCAAGCAGATGGAAAAGCAGGGCGT 26516
Query 21473 GACGAAGGGCGAATGGAAATTCCCCGACAA-----CACGC-CGACATTCAAACGACCCTA 21526
|| ||||| | || | || || | | || ||| ||||| || || ||
Sbjct 26517 GAGCCGCGGCGAGTTCAAGTATCCAGAGGATCTGGAAAGCAAGACGTTCAAGCGCCCATA 26576
Query 21527 --CAGCGTTTGCGGGACTTGCAAACGTGAGCTCGATACGTTGGGCAGGGGCAAGGATTTT 21584
|||| |||||| | ||| | ||| | |||||| | ||| | || || | |||
Sbjct 26577 TGCAGC--TTGCGGTTCATGCTCCAGAGAGATGGATACGATCGGCCGAGGGAATGGCTTT 26634
Query 21585 TATTGGTCCGTGCAGAACGGGGTGATGGAGGTGGTACCTGGGAACGGGTTCATCGGAGGG 21644
|| |||||| | ||||||| | ||| ||| | || || || || |||| ||||| |
Sbjct 26635 TACTGGTCCATCCAGAACGAGACGATCGAGATCGTCCCCGGCAATGGGTATGTCGGAAG- 26693
Query 21645 GTCGTCATGTTGTCGGCAC---AAACTGGGTTGATCGATACCCCTTCGATCACGGACAAC 21701
||||| | || ||| |||| || |||||| || || |||| || || |
Sbjct 26694 --CGTCACGCTGATCACACCGGAAACCGGCATGATCGGAACGCCAGCGATAACCGATACG 26751
Query 21702 GGCGTCAAGGCGAAAGCCTTGCTCAACCCCGAGATCCGTCCGAACCGTCGAGTTCAGATC 21761
|| | | | ||| || | | ||||| || || ||||| ||||| || | ||| ||
Sbjct 26752 GGAATTAGAGTGAAGGCTCTATTGAACCCAGAAATTCGTCCTAACCGACGCATCCAGGTC 26811
Query 21762 AACAGCGAGGTTCTCGAAATGAACTCTGAGAACGGGATGT 21801
|| ||| || | | |||||||| ||| || |||| ||||
Sbjct 26812 AAAAGCCAGACTTTGGAAATGAATTCTCAGGACGGCATGT 26851
Score = 86.0 bits (94), Expect = 2e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 15057 CCGCCGAATAGCCCGGTGACCATCGAGCGCAAAGGCTCGAGCAACCCGCTTATCGACACC 15116
|||||||| || |||||||| ||||||| || ||||| ||||||||||||||||||| |
Sbjct 18531 CCGCCGAACAGTCCGGTGACGATCGAGCTAAAGGGCTCAAGCAACCCGCTTATCGACAGC 18590
Query 15117 GGCGCAATGAGGCAGGCTGTAACCTGG 15143
|||| |||| | ||| || |||||
Sbjct 18591 GGCGAAATGCGAGCGGCCATAGCCTGG 18617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 171627870756720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |