Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23781 206 2e-48 seq76620 116 3e-21 seq29163 107 2e-18 seq24946 100 2e-16 seq26065 86.0 5e-12 >seq23781 Length=1882226 Score = 206 bits (228), Expect = 2e-48 Identities = 405/599 (68%), Gaps = 0/599 (0%) Strand=Plus/Plus Query 40674 TACAATTTGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATT 40733 ||||| ||||| || | ||||| |||| || || ||| | || |||||||| || Sbjct 24822 TACAACCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTT 24881 Query 40734 GCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGA 40793 || || || | ||||||||||| || | || || |||||| || | || | Sbjct 24882 TTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAG 24941 Query 40794 GGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAA 40853 |||||| | |||||| |||| || | || | | ||| | || | || || Sbjct 24942 GGAGTGAAAATTTGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCC 25001 Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 |||| | |||||| ||| | || || |||||||| || |||| | | |||||||| || Sbjct 25002 AATAGAGCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCT 25061 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 |||| | |||| | || |||||| | | ||||| | |||||| | || || Sbjct 25062 GAATACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTG 25121 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 || || || || ||| || | || | | | || | || || |||| || ||||| ||| Sbjct 25122 ATCGACACAATCAAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCA 25181 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | || | | | | ||||| | || || || || | || ||||| ||||| Sbjct 25182 AAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTG 25241 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||| || ||||| || || ||||| ||||| || || |||||||| || || || || Sbjct 25242 AATGGGGAGCTGTCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCC 25301 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || || || || || || |||||||| || ||||| |||||| | || | | || Sbjct 25302 TTCAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAG 25361 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 || ||||| || || ||||| | ||||||| ||| |||||| | |||||||| ||||| Sbjct 25362 CCAGGTGACTTCGTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCC 25420 >seq76620 Length=1872171 Score = 116 bits (128), Expect = 3e-21 Identities = 294/446 (66%), Gaps = 16/446 (4%) Strand=Plus/Plus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| || |||| || || | ||| |||| || |||||| | |||| | || || | Sbjct 1273056 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCCGAATGGCCAG 1273115 Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360 | | |||| ||| || |||| || || | ||||||| | |||||| | Sbjct 1273116 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCAAAGTCCT 1273175 Query 77361 CCTTGTTGACAACTGACCCTCCGCCA--TGCAG--CCTCCAGCCGTTCTGCTTCCAGTTC 77416 |||| ||| || |||| ||| ||| | ||||||||| |||||||||||| | Sbjct 1273176 CCTTATTGGTCAC-----CTCCTCCAGGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCC 1273230 Query 77417 TTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTC 77476 || ||||| | || | |||||| |||||||||| ||||||| |||||||| Sbjct 1273231 TTCACCCAGGTGGTGATGCCATTG-------ACATGCTGTCCGTGTAGAGAACCAGCTTA 1273283 Query 77477 TTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGC 77536 |||| | | ||| |||||| | | |||||| | || || || || || || | Sbjct 1273284 GTGATGTCCTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTT 1273343 Query 77537 TGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAA 77596 |||||||| |||||||| ||||| | | ||||| | || || ||| | Sbjct 1273344 TGGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCTAG 1273403 Query 77597 TATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTG 77656 || |||| || || || || || || | ||||| |||| |||| ||||||| Sbjct 1273404 TACACGCTGATTCCTGCGCGAGCCCTCTTGCGCCCGTTACTGGAGCAGCAGCGGTCAGTG 1273463 Query 77657 TAGACCACCACGGCGTCACCCATGTA 77682 |||| ||||| | ||| |||||||| Sbjct 1273464 CAGACAACCACAGAGTCCCCCATGTA 1273489 >seq29163 Length=2664742 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 299716 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCGTTGTTTCTATGGCTTCCAAATTGC 299774 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 299775 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 299832 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 301382 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 301441 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 301442 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 301497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| ||||||||||||||||| |||| || || || ||||| ||| Sbjct 303016 GTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTT 303075 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || | || || || |||||| ||||||| || ||| Sbjct 303076 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 303114 >seq24946 Length=4856584 Score = 100 bits (110), Expect = 2e-16 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| |||||||||||| || | |||||| | || || ||||| ||||| ||||| Sbjct 2640856 AACAGTGGTTTGCACATTATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 2640797 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 2640796 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 2640737 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | |||||||| || || ||||| ||||| ||| Sbjct 2640736 GATGGTGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 2640695 >seq26065 Length=1373002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 1028033 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 1028092 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 1028093 AACGAGTTTCAGAGTATCAGCG 1028114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397081462306600