Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 206 2e-48
seq76620 116 3e-21
seq29163 107 2e-18
seq24946 100 2e-16
seq26065 86.0 5e-12
>seq23781
Length=1882226
Score = 206 bits (228), Expect = 2e-48
Identities = 405/599 (68%), Gaps = 0/599 (0%)
Strand=Plus/Plus
Query 40674 TACAATTTGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATT 40733
||||| ||||| || | ||||| |||| || || ||| | || |||||||| ||
Sbjct 24822 TACAACCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTT 24881
Query 40734 GCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGA 40793
|| || || | ||||||||||| || | || || |||||| || | || |
Sbjct 24882 TTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAG 24941
Query 40794 GGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAA 40853
|||||| | |||||| |||| || | || | | ||| | || | || ||
Sbjct 24942 GGAGTGAAAATTTGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCC 25001
Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913
|||| | |||||| ||| | || || |||||||| || |||| | | |||||||| ||
Sbjct 25002 AATAGAGCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCT 25061
Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973
|||| | |||| | || |||||| | | ||||| | |||||| | || ||
Sbjct 25062 GAATACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTG 25121
Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033
|| || || || ||| || | || | | | || | || || |||| || ||||| |||
Sbjct 25122 ATCGACACAATCAAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCA 25181
Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093
| || | | | | ||||| | || || || || | || ||||| |||||
Sbjct 25182 AAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTG 25241
Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153
||||| || ||||| || || ||||| ||||| || || |||||||| || || || ||
Sbjct 25242 AATGGGGAGCTGTCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCC 25301
Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213
|| || || || || || || |||||||| || ||||| |||||| | || | | ||
Sbjct 25302 TTCAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAG 25361
Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272
|| ||||| || || ||||| | ||||||| ||| |||||| | |||||||| |||||
Sbjct 25362 CCAGGTGACTTCGTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCC 25420
>seq76620
Length=1872171
Score = 116 bits (128), Expect = 3e-21
Identities = 294/446 (66%), Gaps = 16/446 (4%)
Strand=Plus/Plus
Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300
|||| || |||| || || | ||| |||| || |||||| | |||| | || || |
Sbjct 1273056 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCCGAATGGCCAG 1273115
Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360
| | |||| ||| || |||| || || | ||||||| | |||||| |
Sbjct 1273116 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCAAAGTCCT 1273175
Query 77361 CCTTGTTGACAACTGACCCTCCGCCA--TGCAG--CCTCCAGCCGTTCTGCTTCCAGTTC 77416
|||| ||| || |||| ||| ||| | ||||||||| |||||||||||| |
Sbjct 1273176 CCTTATTGGTCAC-----CTCCTCCAGGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCC 1273230
Query 77417 TTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTC 77476
|| ||||| | || | |||||| |||||||||| ||||||| ||||||||
Sbjct 1273231 TTCACCCAGGTGGTGATGCCATTG-------ACATGCTGTCCGTGTAGAGAACCAGCTTA 1273283
Query 77477 TTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGC 77536
|||| | | ||| |||||| | | |||||| | || || || || || || |
Sbjct 1273284 GTGATGTCCTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTT 1273343
Query 77537 TGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAA 77596
|||||||| |||||||| ||||| | | ||||| | || || ||| |
Sbjct 1273344 TGGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCTAG 1273403
Query 77597 TATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTG 77656
|| |||| || || || || || || | ||||| |||| |||| |||||||
Sbjct 1273404 TACACGCTGATTCCTGCGCGAGCCCTCTTGCGCCCGTTACTGGAGCAGCAGCGGTCAGTG 1273463
Query 77657 TAGACCACCACGGCGTCACCCATGTA 77682
|||| ||||| | ||| ||||||||
Sbjct 1273464 CAGACAACCACAGAGTCCCCCATGTA 1273489
>seq29163
Length=2664742
Score = 107 bits (118), Expect = 2e-18
Identities = 96/118 (81%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||||| || || || ||||| ||||| || ||||||||
Sbjct 299716 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCGTTGTTTCTATGGCTTCCAAATTGC 299774
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 299775 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 299832
Score = 105 bits (116), Expect = 5e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||| | ||||||||||| |||||||| || || ||||||
Sbjct 301382 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 301441
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238
| ||||| ||| | ||||||||||| |||||||||| | |||||||| |||||
Sbjct 301442 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 301497
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548
||| |||| || ||||| ||||||||||||||||| |||| || || || ||||| |||
Sbjct 303016 GTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTT 303075
Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|| || | || || || |||||| ||||||| || |||
Sbjct 303076 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 303114
>seq24946
Length=4856584
Score = 100 bits (110), Expect = 2e-16
Identities = 119/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| |||||||||||| || | |||||| | || || ||||| ||||| |||||
Sbjct 2640856 AACAGTGGTTTGCACATTATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 2640797
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | || || ||||||||||||||||| || || ||||| ||| |
Sbjct 2640796 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 2640737
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| ||||| | |||||||| || || ||||| ||||| |||
Sbjct 2640736 GATGGTGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 2640695
>seq26065
Length=1373002
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 1028033 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 1028092
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 1028093 AACGAGTTTCAGAGTATCAGCG 1028114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397081462306600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |