Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq39996 102 1e-16 >seq39996 Length=45000 Score = 102 bits (112), Expect = 1e-16 Identities = 257/382 (67%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 |||| || || ||| || || ||||| || || || || ||| |||||| | ||| Sbjct 6565 CACGACGACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGG 6624 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCA 14167 ||||| || || ||||||| | |||||| || ||| || ||||| ||||| || Sbjct 6625 ACGGTTGGTGGCGGCGATGAGGATGATGCCT-TCATTCGCC-TCGAAGCCGTCCATTTCG 6682 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT-ACCACCCGCACT 14226 || || || || | || |||||||| || || || | | || | ||| || | Sbjct 6683 ACCAGCAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACC-GCCACCAAGACCGGCGCC 6741 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 || || ||||||||||| ||||| |||||||| | ||| || ||| ||| | Sbjct 6742 ACGATGGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTT 6801 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || || || || ||||| | | || ||||| || || ||||| ||||| || Sbjct 6802 GGCTTGCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAA 6861 Query 14347 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | ||||| || | || ||| || || || | |||||| |||| || || || | Sbjct 6862 GTCCGAACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCA 6920 Query 14406 GGAGGGTCTTCCCCGTCCCTGG 14427 | || ||||| ||||| || || Sbjct 6921 GAAGCGTCTTACCCGTACCGGG 6942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617837482379200