Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq39996 98.7 1e-15 >seq39996 Length=45000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 254/378 (67%), Gaps = 12/378 (3%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||| || || ||||| ||||| || || ||| ||||| | ||| || || Sbjct 6571 GACCTGACGGTCGAAACGACCGGGACGCAGAAGTGCGGGGTCAAGAACGTCAGGACGGTT 6630 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 || |||||||||| | || ||| ||||| || || || ||||| || || Sbjct 6631 GGTGGCGGCGATGAGGATGATGCCT---TCATTCGCCTCGAAGCCGTCCATTTCGACCAG 6687 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT-ACCACCAGCACTGCGTT 9692 || ||||| | || ||||| || || || || | | || | ||| || | || | Sbjct 6688 CAGCTGGTTCAGCGTCTGTTCGCGCTCGTCGTTACC-GCCACCAAGACCGGCGCCACGAT 6746 Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCG 9751 | || ||||| || || || || ||||||| |||||| ||| ||| ||| | || Sbjct 6747 GGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTG-GCT 6805 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 || || | || || || || | ||||| || || || ||||| ||||| |||| Sbjct 6806 TGCTCGAACATGTCACGCACGCGGCTTGCGCCGACGCCGACGAACATTTCCACGAAGTCC 6865 Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | ||||| || | || ||| || ||||| | |||||| || | || || || ||||| Sbjct 6866 GAACCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCGGCGACGGAACGCGCCAGAAG 6924 Query 9871 AGTCTTACCCGTACCTGG 9888 |||||||||||||| || Sbjct 6925 CGTCTTACCCGTACCGGG 6942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582697078436800