Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 156 3e-33
seq66935 87.8 1e-12
seq34278 87.8 1e-12
>seq23781
Length=1882226
Score = 156 bits (172), Expect = 3e-33
Identities = 392/588 (67%), Gaps = 17/588 (3%)
Strand=Plus/Minus
Query 111712 GGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGC 111771
|||| |||||||| | |||| || |||||||| | | || | || || | |||
Sbjct 25420 GGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGC 25361
Query 111772 TCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAAT 111831
| || | ||||||||||| |||||||| ||||| || ||| || ||||| || ||
Sbjct 25360 TTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAG 25301
Query 111832 GGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGT 111891
|||||||| |||||||| |||||||| ||||| || | ||| || || || | |
Sbjct 25300 GGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTC 25241
Query 111892 GACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA---AAG 111948
||| || || || || || | || || || || | ||||| | | |
Sbjct 25240 ACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTT 25181
Query 111949 GGTCCCCATGCACACATGATCATCCTTCTGCTG-TAGCGATTATGTTCAATGTCGTGTAT 112007
|| ||| ||||||| ||| || |||||| || ||| | | | || | ||| || ||
Sbjct 25180 GGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGT-GTCGAT 25122
Query 112008 GACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCA-----GTG 112062
|| || || || |||| |||| ||| | ||||| |||| ||||| ||
Sbjct 25121 CACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAAT----CTGA-ATCCATATCTTTG 25067
Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122
||| |||||| | || ||||| ||||| ||||||| || |||| ||| || |||
Sbjct 25066 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 25007
Query 112123 GTATCTGGA-AATTGCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181
||| |||| || | | || ||| || || | | | || |||||| ||
Sbjct 25006 CTAT-TGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 24948
Query 112182 CACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTC 112241
|||||| || || || | || | || || |||||||| | |||||||| ||||| ||
Sbjct 24947 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCACAGCAACTC 24888
Query 112242 TTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289
|||| ||| ||||||||| | || | ||| || || ||||| |||||
Sbjct 24887 CTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAA 24840
>seq66935
Length=8519
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840
||||||||||| |||||||| ||||| || ||| || ||||| || || ||||||||
Sbjct 2444 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 2503
Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881
|||||||| |||||||| | ||| || | ||| || || ||
Sbjct 2504 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAG 2544
>seq34278
Length=4487281
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840
||||||||||| |||||||| ||||| || ||| || ||||| || || ||||||||
Sbjct 3963282 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 3963341
Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881
|||||||| |||||||| | ||| || | ||| || || ||
Sbjct 3963342 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAG 3963382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391576254963160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |