Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq23781 156 3e-33 seq66935 87.8 1e-12 seq34278 87.8 1e-12 >seq23781 Length=1882226 Score = 156 bits (172), Expect = 3e-33 Identities = 392/588 (67%), Gaps = 17/588 (3%) Strand=Plus/Minus Query 111712 GGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGC 111771 |||| |||||||| | |||| || |||||||| | | || | || || | ||| Sbjct 25420 GGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGC 25361 Query 111772 TCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAAT 111831 | || | ||||||||||| |||||||| ||||| || ||| || ||||| || || Sbjct 25360 TTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAG 25301 Query 111832 GGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGT 111891 |||||||| |||||||| |||||||| ||||| || | ||| || || || | | Sbjct 25300 GGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTC 25241 Query 111892 GACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA---AAG 111948 ||| || || || || || | || || || || | ||||| | | | Sbjct 25240 ACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTT 25181 Query 111949 GGTCCCCATGCACACATGATCATCCTTCTGCTG-TAGCGATTATGTTCAATGTCGTGTAT 112007 || ||| ||||||| ||| || |||||| || ||| | | | || | ||| || || Sbjct 25180 GGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGT-GTCGAT 25122 Query 112008 GACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCA-----GTG 112062 || || || || |||| |||| ||| | ||||| |||| ||||| || Sbjct 25121 CACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAAT----CTGA-ATCCATATCTTTG 25067 Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 ||| |||||| | || ||||| ||||| ||||||| || |||| ||| || ||| Sbjct 25066 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 25007 Query 112123 GTATCTGGA-AATTGCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181 ||| |||| || | | || ||| || || | | | || |||||| || Sbjct 25006 CTAT-TGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 24948 Query 112182 CACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTC 112241 |||||| || || || | || | || || |||||||| | |||||||| ||||| || Sbjct 24947 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCACAGCAACTC 24888 Query 112242 TTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 |||| ||| ||||||||| | || | ||| || || ||||| ||||| Sbjct 24887 CTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAA 24840 >seq66935 Length=8519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 ||||||||||| |||||||| ||||| || ||| || ||||| || || |||||||| Sbjct 2444 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 2503 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 |||||||| |||||||| | ||| || | ||| || || || Sbjct 2504 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAG 2544 >seq34278 Length=4487281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 ||||||||||| |||||||| ||||| || ||| || ||||| || || |||||||| Sbjct 3963282 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 3963341 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 |||||||| |||||||| | ||| || | ||| || || || Sbjct 3963342 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAG 3963382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391576254963160