Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 334 6e-87
seq70150 105 5e-18
seq66935 91.5 1e-13
seq34278 91.5 1e-13
seq43829 87.8 1e-12
>seq23781
Length=1882226
Score = 334 bits (370), Expect = 6e-87
Identities = 487/688 (71%), Gaps = 0/688 (0%)
Strand=Plus/Minus
Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897
|||| || || || || || | || |||||||||||||| || || | || || |||||
Sbjct 25461 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGT 25402
Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
| | ||| || |||||||| |||| || || || || || | || | |||| ||| |
Sbjct 25401 AAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTG 25342
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| |||||||| ||||| || | ||||||||| || || ||||| || || || |||||||
Sbjct 25341 CGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGT 25282
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077
| |||||||| ||||| | ||| || || ||||| || | |||||| ||||| || |
Sbjct 25281 CTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGA 25222
Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137
||||||||| || || || |||||||| | ||||| || ||||| || |||| ||
Sbjct 25221 GGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 25162
Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197
|||| | |||| | |||||| | |||| ||| | | |||||||| ||||| |
Sbjct 25161 TGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTA 25102
Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257
| || || || || |||| ||| || |||| || || || |||||||||||||
Sbjct 25101 CTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACT 25042
Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317
|||| || || ||||| |||| || || || | || | ||||||| ||||
Sbjct 25041 GGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCA 24982
Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377
| ||||||| ||| |||||||| ||||| || || || ||||| ||| || || || |
Sbjct 24981 AGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAG 24922
Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437
||| ||||| || ||| |||||||||| |||||||| || | ||||| || || |
Sbjct 24921 CGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACAC 24862
Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497
||||| || || || ||||| | | | ||| ||||| ||||| || ||||
Sbjct 24861 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACA 24802
Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525
| |||| | || ||||| || | |||
Sbjct 24801 CCGACAGGGTGCCAGTGCCGGTGCGGTC 24774
>seq70150
Length=2088832
Score = 105 bits (116), Expect = 5e-18
Identities = 171/241 (71%), Gaps = 10/241 (4%)
Strand=Plus/Minus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 228713 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCAT 228654
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 228653 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 228594
Query 110499 CTGCTT-GCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 110557
||| || || ||| ||||||| | | |||| | | || | || || || || |
Sbjct 228593 CTGTTTAGCTTCT-TCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCC 228535
Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615
||| || |||| ||||| | ||||| || |||||||||||| ||| |||||
Sbjct 228534 TGAGT------GGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACA 228481
Query 110616 C 110616
|
Sbjct 228480 C 228480
>seq66935
Length=8519
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || ||||||||||||||||| || || ||||| |||| ||
Sbjct 4805 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 4864
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| || | || | ||||||| ||||| ||||||| ||| |||||||| ||
Sbjct 4865 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 4924
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| || || || ||||| ||| || || || | ||| ||||| ||
Sbjct 4925 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 4972
>seq34278
Length=4487281
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || ||||||||||||||||| || || ||||| |||| ||
Sbjct 3965643 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 3965702
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| || | || | ||||||| ||||| ||||||| ||| |||||||| ||
Sbjct 3965703 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 3965762
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| || || || ||||| ||| || || || | ||| ||||| ||
Sbjct 3965763 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 3965810
>seq43829
Length=3831609
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 2667316 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2667375
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 2667376 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405927518473440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |