Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq23781 334 6e-87 seq70150 105 5e-18 seq66935 91.5 1e-13 seq34278 91.5 1e-13 seq43829 87.8 1e-12 >seq23781 Length=1882226 Score = 334 bits (370), Expect = 6e-87 Identities = 487/688 (71%), Gaps = 0/688 (0%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || || || || || | || |||||||||||||| || || | || || ||||| Sbjct 25461 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGT 25402 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || |||||||| |||| || || || || || | || | |||| ||| | Sbjct 25401 AAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTG 25342 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || | ||||||||| || || ||||| || || || ||||||| Sbjct 25341 CGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGT 25282 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | |||||||| ||||| | ||| || || ||||| || | |||||| ||||| || | Sbjct 25281 CTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGA 25222 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137 ||||||||| || || || |||||||| | ||||| || ||||| || |||| || Sbjct 25221 GGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 25162 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 |||| | |||| | |||||| | |||| ||| | | |||||||| ||||| | Sbjct 25161 TGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTA 25102 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | || || || || |||| ||| || |||| || || || ||||||||||||| Sbjct 25101 CTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACT 25042 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317 |||| || || ||||| |||| || || || | || | ||||||| |||| Sbjct 25041 GGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCA 24982 Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377 | ||||||| ||| |||||||| ||||| || || || ||||| ||| || || || | Sbjct 24981 AGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAG 24922 Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437 ||| ||||| || ||| |||||||||| |||||||| || | ||||| || || | Sbjct 24921 CGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACAC 24862 Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497 ||||| || || || ||||| | | | ||| ||||| ||||| || |||| Sbjct 24861 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACA 24802 Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525 | |||| | || ||||| || | ||| Sbjct 24801 CCGACAGGGTGCCAGTGCCGGTGCGGTC 24774 >seq70150 Length=2088832 Score = 105 bits (116), Expect = 5e-18 Identities = 171/241 (71%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 228713 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCAT 228654 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 228653 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 228594 Query 110499 CTGCTT-GCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 110557 ||| || || ||| ||||||| | | |||| | | || | || || || || | Sbjct 228593 CTGTTTAGCTTCT-TCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCC 228535 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615 ||| || |||| ||||| | ||||| || |||||||||||| ||| ||||| Sbjct 228534 TGAGT------GGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACA 228481 Query 110616 C 110616 | Sbjct 228480 C 228480 >seq66935 Length=8519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || ||||| |||| || Sbjct 4805 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 4864 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | || | ||||||| ||||| ||||||| ||| |||||||| || Sbjct 4865 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 4924 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| || || || ||||| ||| || || || | ||| ||||| || Sbjct 4925 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 4972 >seq34278 Length=4487281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || ||||| |||| || Sbjct 3965643 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 3965702 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | || | ||||||| ||||| ||||||| ||| |||||||| || Sbjct 3965703 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 3965762 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| || || || ||||| ||| || || || | ||| ||||| || Sbjct 3965763 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 3965810 >seq43829 Length=3831609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 2667316 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2667375 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2667376 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405927518473440