Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_028657.1
Length=60919
Score E
Sequences producing significant alignments: (Bits) Value
seq40802 147 9e-31
seq40494 86.0 2e-12
>seq40802
Length=1476000
Score = 147 bits (162), Expect = 9e-31
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 25716 TACACCTTGTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTC 25775
|||| || ||| ||||||||||||| || ||| ||||| || || || |||||
Sbjct 1465360 TACATCTGGTCTTCGGCGTAAATCGCGGCGCTGATGATCGCACCACCAACTCGACGCTTG 1465419
Query 25776 CCGTAGCAGATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCG 25835
||||| || | ||| |||||||| ||| |||||||||||| ||||||||||||| |||
Sbjct 1465420 CCGTAACACAACGGGACCGGGTTGCCGGAGGCGGTGGTGTTCTTGGCGCTGCCGAATGCG 1465479
Query 25836 TAGCTGGGCAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAGC 25895
|||| ||| ||| || ||||| ||||| ||| ||||| |||||||| ||||||
Sbjct 1465480 TAGCCGGGGGTGTTTTCTGGCGCGGCGCTGGTCTTGAGGCCGCCGGCTTGGGGACTGAGC 1465539
Query 25896 ATTTGGATGACGCCGCCGGCA 25916
||||| || || || || |||
Sbjct 1465540 ATTTGAATCACACCACCAGCA 1465560
Score = 114 bits (126), Expect = 5e-21
Identities = 366/558 (66%), Gaps = 21/558 (4%)
Strand=Plus/Plus
Query 25724 GTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTCCCGTAGCA 25783
|||||| || || || | || ||| ||||| || ||||| ||||| ||| |||
Sbjct 1465949 GTCCTCTGCATAGATGGCGGCGCTGATGATCGCGCCACCCCAGCGGCGACGGCCGATGCA 1466008
Query 25784 GATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCGTAGCTGGG 25843
| ||||| || || || ||| ||| | || || || || || |||| ||
Sbjct 1466009 AAGAGGCACGGGCAAGCCCGACGCCACGGTATTTTTCGCACTACCAAAAGCATAGCCAGG 1466068
Query 25844 CAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAGCATTTGGAT 25903
|||||| ||||| ||||| ||||| |||||| ||||| ||||| | ||| || ||
Sbjct 1466069 AGTGTTCTCGGGCGCGGCGCTAGACTTCAAGCCCTGGGCTTGCGGGCTCAACATCTGAAT 1466128
Query 25904 GACGCCGCCGGCAACCATCCCTATCCCTGCAGGCAGCGCATACGGGGCT--ATGACGGGA 25961
||||||||||| ||| | || || | ||||| | || || | ||
Sbjct 1466129 TACGCCGCCGGCGGCCAAGGCGATACCCG------GCGCAAGAGTTGCACCATTT-GTGA 1466181
Query 25962 AAAGCGTAGGAAGCAGCGATCAGCACAGCCCCGACTATCGTCTGCACCAACCCGCCACGC 26021
|| | | || ||||||| |||||||| | ||||| |||| | ||| | |||
Sbjct 1466182 AAGGGCTCATAA----CGATCAGTACAGCCCCTATGATCGTTTGCAAGATACCGGCCCGC 1466237
Query 26022 TTCCGGCCACGCATGACCGGAGCAATGCGAATTTCCTCGGCGCCCCCGAACTGCAGCTCA 26081
|| | ||| || || || || || || || | |||| | | ||||||
Sbjct 1466238 TTACTGCCGATGATCACGGGTGCGATAATGATGTCGCCATCGCCTTGATAGTTGAGCTCA 1466297
Query 26082 -TCT-TGGGAAATGTTCCGTTTCCCACGGAATACAGCGAACTCCATACCTCGCAGGTGGG 26139
||| | || | || | || || ||||| || |||||| | | || ||| ||
Sbjct 1466298 CTCTCTCCGATGTTTTTCTTT--CCTCGGAAAACGGCGAACACAAGTCCGCGCGACCTGG 1466355
Query 26140 AATTGGCGAGGAAGCGCTCGAGGCCTGGAATCTGCACGCACAAGGCCTTGATCGCTTCCG 26199
|| | || ||| ||||| ||||| | |||||||||||||| || || | |||||||
Sbjct 1466356 CGTTTGAGATGAATCGCTCAAGGCCGGAAATCTGCACGCACAGCGCTTTCAAGGCTTCCG 1466415
Query 26200 CAGTCGACCCGACTAGCATACG--GTACTCCCGGCCGAACTGCCGGAGCGCGCCGTAGAG 26257
| | || || || |||| | | ||| || |||||||||||||||| ||||| ||
Sbjct 1466416 CTGGCGTCCGCAC-AGCA-AGGTCGTAGGACCTGCCGAACTGCCGGAGCTGCCCGTAAAG 1466473
Query 26258 TTTGATGGTGGTCATCGG 26275
||||||||||||||| ||
Sbjct 1466474 TTTGATGGTGGTCATAGG 1466491
>seq40494
Length=1808469
Score = 86.0 bits (94), Expect = 2e-12
Identities = 85/109 (78%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 19150 ACGCCGGCTCGAGGGCCGGCGTTCGGGAGGATCTGCAGCAACTGCTGCTCGGTGATGGGC 19209
|||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1216082 ACGCCGGCAACTTGGCCGGCGTTCGGGAGGATCTGCAGCAGTTGCTGCGTGGTGATGGGC 1216023
Query 19210 AT--GTGAGCTCCAGAAACGACGAAGCCCGCGCAGGGCGGGCTTTCGTT 19256
|| | ||||||| | || || ||||| ||||||||| | || ||
Sbjct 1216022 ATTCTCAATCTCCAGATAGGAGAAAACCCGCACAGGGCGGGTTGTCTTT 1215974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194640321881040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |