Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq40802 147 9e-31 seq40494 86.0 2e-12 >seq40802 Length=1476000 Score = 147 bits (162), Expect = 9e-31 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 25716 TACACCTTGTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTC 25775 |||| || ||| ||||||||||||| || ||| ||||| || || || ||||| Sbjct 1465360 TACATCTGGTCTTCGGCGTAAATCGCGGCGCTGATGATCGCACCACCAACTCGACGCTTG 1465419 Query 25776 CCGTAGCAGATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCG 25835 ||||| || | ||| |||||||| ||| |||||||||||| ||||||||||||| ||| Sbjct 1465420 CCGTAACACAACGGGACCGGGTTGCCGGAGGCGGTGGTGTTCTTGGCGCTGCCGAATGCG 1465479 Query 25836 TAGCTGGGCAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAGC 25895 |||| ||| ||| || ||||| ||||| ||| ||||| |||||||| |||||| Sbjct 1465480 TAGCCGGGGGTGTTTTCTGGCGCGGCGCTGGTCTTGAGGCCGCCGGCTTGGGGACTGAGC 1465539 Query 25896 ATTTGGATGACGCCGCCGGCA 25916 ||||| || || || || ||| Sbjct 1465540 ATTTGAATCACACCACCAGCA 1465560 Score = 114 bits (126), Expect = 5e-21 Identities = 366/558 (66%), Gaps = 21/558 (4%) Strand=Plus/Plus Query 25724 GTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTCCCGTAGCA 25783 |||||| || || || | || ||| ||||| || ||||| ||||| ||| ||| Sbjct 1465949 GTCCTCTGCATAGATGGCGGCGCTGATGATCGCGCCACCCCAGCGGCGACGGCCGATGCA 1466008 Query 25784 GATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCGTAGCTGGG 25843 | ||||| || || || ||| ||| | || || || || || |||| || Sbjct 1466009 AAGAGGCACGGGCAAGCCCGACGCCACGGTATTTTTCGCACTACCAAAAGCATAGCCAGG 1466068 Query 25844 CAAGTTCTCCGGCGCCGCGCTCTGCTTCAGGCCCTGTGCTTGGGGGCTGAGCATTTGGAT 25903 |||||| ||||| ||||| ||||| |||||| ||||| ||||| | ||| || || Sbjct 1466069 AGTGTTCTCGGGCGCGGCGCTAGACTTCAAGCCCTGGGCTTGCGGGCTCAACATCTGAAT 1466128 Query 25904 GACGCCGCCGGCAACCATCCCTATCCCTGCAGGCAGCGCATACGGGGCT--ATGACGGGA 25961 ||||||||||| ||| | || || | ||||| | || || | || Sbjct 1466129 TACGCCGCCGGCGGCCAAGGCGATACCCG------GCGCAAGAGTTGCACCATTT-GTGA 1466181 Query 25962 AAAGCGTAGGAAGCAGCGATCAGCACAGCCCCGACTATCGTCTGCACCAACCCGCCACGC 26021 || | | || ||||||| |||||||| | ||||| |||| | ||| | ||| Sbjct 1466182 AAGGGCTCATAA----CGATCAGTACAGCCCCTATGATCGTTTGCAAGATACCGGCCCGC 1466237 Query 26022 TTCCGGCCACGCATGACCGGAGCAATGCGAATTTCCTCGGCGCCCCCGAACTGCAGCTCA 26081 || | ||| || || || || || || || | |||| | | |||||| Sbjct 1466238 TTACTGCCGATGATCACGGGTGCGATAATGATGTCGCCATCGCCTTGATAGTTGAGCTCA 1466297 Query 26082 -TCT-TGGGAAATGTTCCGTTTCCCACGGAATACAGCGAACTCCATACCTCGCAGGTGGG 26139 ||| | || | || | || || ||||| || |||||| | | || ||| || Sbjct 1466298 CTCTCTCCGATGTTTTTCTTT--CCTCGGAAAACGGCGAACACAAGTCCGCGCGACCTGG 1466355 Query 26140 AATTGGCGAGGAAGCGCTCGAGGCCTGGAATCTGCACGCACAAGGCCTTGATCGCTTCCG 26199 || | || ||| ||||| ||||| | |||||||||||||| || || | ||||||| Sbjct 1466356 CGTTTGAGATGAATCGCTCAAGGCCGGAAATCTGCACGCACAGCGCTTTCAAGGCTTCCG 1466415 Query 26200 CAGTCGACCCGACTAGCATACG--GTACTCCCGGCCGAACTGCCGGAGCGCGCCGTAGAG 26257 | | || || || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 1466416 CTGGCGTCCGCAC-AGCA-AGGTCGTAGGACCTGCCGAACTGCCGGAGCTGCCCGTAAAG 1466473 Query 26258 TTTGATGGTGGTCATCGG 26275 ||||||||||||||| || Sbjct 1466474 TTTGATGGTGGTCATAGG 1466491 >seq40494 Length=1808469 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 19150 ACGCCGGCTCGAGGGCCGGCGTTCGGGAGGATCTGCAGCAACTGCTGCTCGGTGATGGGC 19209 |||||||| ||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1216082 ACGCCGGCAACTTGGCCGGCGTTCGGGAGGATCTGCAGCAGTTGCTGCGTGGTGATGGGC 1216023 Query 19210 AT--GTGAGCTCCAGAAACGACGAAGCCCGCGCAGGGCGGGCTTTCGTT 19256 || | ||||||| | || || ||||| ||||||||| | || || Sbjct 1216022 ATTCTCAATCTCCAGATAGGAGAAAACCCGCACAGGGCGGGTTGTCTTT 1215974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194640321881040