Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq12156 154 4e-33 >seq12156 Length=2201700 Score = 154 bits (170), Expect = 4e-33 Identities = 237/337 (70%), Gaps = 1/337 (0%) Strand=Plus/Plus Query 39377 CTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCG 39436 ||| ||||||||| |||| ||||||| | ||||||| || ||| ||| | ||| | Sbjct 143216 CTGTAGTGGTCAAGTAAAATTGGCCACGGTTTTAGAGTCATT-CCAATATAAACGTTCTG 143274 Query 39437 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 39496 | || ||||| | ||||||||||||||||| || ||||| | |||||||||||| Sbjct 143275 ACTCATTTGGCGTTAACCCACCATTATATTGATGGGGTCTGGTCTCACTGTAATATCCAG 143334 Query 39497 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 39556 ||| || | || || | | | |||| || | || | |||| || | || || | Sbjct 143335 TGATGTAATTTGTGATCTCTTTATCTGCTTCTGTAAAATTCCCATAACCACTGGCGGGTA 143394 Query 39557 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 39616 ||| || |||| ||| || ||||| ||||||||||| ||||||||| || || | Sbjct 143395 TCCACTCAGATTTCAAACTTCTAAAGAAACGCTCCATTGGTGCGTTATCCCAACAATTCC 143454 Query 39617 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 39676 | || ||||||||||| ||| ||| | | ||| | ||| || | ||| | | || Sbjct 143455 CGCGACGACTCATACTTTGCTCAATCTGAAGACGCCATATTAATTGTCTGAATTTCAAGC 143514 Query 39677 TCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC 39713 |||| ||||| |||||||||||||| | ||||| Sbjct 143515 TCGTGTAATGTGAACCTTGATCGCTGTGATATATCAC 143551 Score = 152 bits (168), Expect = 1e-32 Identities = 236/336 (70%), Gaps = 1/336 (0%) Strand=Plus/Plus Query 16753 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 16812 || ||||||||| |||| ||||||| | ||||||| || ||| ||| | ||| || Sbjct 143217 TGTAGTGGTCAAGTAAAATTGGCCACGGTTTTAGAGTCATT-CCAATATAAACGTTCTGA 143275 Query 16813 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 16872 || ||||| | ||||||||||||||||| || ||||| | |||||||||||| Sbjct 143276 CTCATTTGGCGTTAACCCACCATTATATTGATGGGGTCTGGTCTCACTGTAATATCCAGT 143335 Query 16873 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 16932 ||| || | || || | | | |||| || | || | |||| || | || || | Sbjct 143336 GATGTAATTTGTGATCTCTTTATCTGCTTCTGTAAAATTCCCATAACCACTGGCGGGTAT 143395 Query 16933 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 16992 ||| || |||| ||| || ||||| ||||||||||| ||||||||| || || || Sbjct 143396 CCACTCAGATTTCAAACTTCTAAAGAAACGCTCCATTGGTGCGTTATCCCAACAATTCCC 143455 Query 16993 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 17052 || ||||||||||| ||| ||| | | ||| | ||| || | ||| | | ||| Sbjct 143456 GCGACGACTCATACTTTGCTCAATCTGAAGACGCCATATTAATTGTCTGAATTTCAAGCT 143515 Query 17053 CGTATAATGACTGCCTTGATCGCTGTGGAACATCAC 17088 ||| ||||| |||||||||||||| | ||||| Sbjct 143516 CGTGTAATGTGAACCTTGATCGCTGTGATATATCAC 143551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132038653992000